Mock Version: 1.2.17 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/nco.spec'], chrootPath='/var/lib/mock/epel-1-armhfp-bdfa2744fb0c00e4c0814cc0175a576d21bcb20b/root'shell=FalseprintOutput=Falseenv={'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'}gid=135user='mockbuild'timeout=0logger=uid=996) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target armv7hl --nodeps /builddir/build/SPECS/nco.spec'] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'} and shell False Building target platforms: armv7hl Building for target armv7hl Wrote: /builddir/build/SRPMS/nco-4.7.5-2.el7.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', u'/usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/nco.spec'], chrootPath='/var/lib/mock/epel-1-armhfp-bdfa2744fb0c00e4c0814cc0175a576d21bcb20b/root'shell=Falseuid=996env={'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'}gid=135user='mockbuild'timeout=0private_network=Truelogger=printOutput=False) Executing command: ['bash', '--login', '-c', u'/usr/bin/rpmbuild -bb --target armv7hl --nodeps /builddir/build/SPECS/nco.spec'] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'} and shell False Building target platforms: armv7hl Building for target armv7hl Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.CIq7Pd + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf nco-4.7.5 + /usr/bin/gzip -dc /builddir/build/SOURCES/nco-4.7.5.tar.gz + /usr/bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd nco-4.7.5 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (nco-install_C_headers.patch): + echo 'Patch #0 (nco-install_C_headers.patch):' + /usr/bin/cat /builddir/build/SOURCES/nco-install_C_headers.patch + /usr/bin/patch -p1 -b --suffix .install_C_headers --fuzz=0 patching file src/nco/Makefile.in + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.215QKc + umask 022 + cd /builddir/build/BUILD + cd nco-4.7.5 + CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro ' + export LDFLAGS + '[' 1 == 1 ']' + '[' arm == ppc64le ']' ++ find . -name config.guess -o -name config.sub + for i in '$(find . -name config.guess -o -name config.sub)' ++ basename ./autobld/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./autobld/config.sub ++ basename ./autobld/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./autobld/config.sub '/usr/lib/rpm/redhat/config.sub' -> './autobld/config.sub' + for i in '$(find . -name config.guess -o -name config.sub)' ++ basename ./autobld/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./autobld/config.guess ++ basename ./autobld/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./autobld/config.guess '/usr/lib/rpm/redhat/config.guess' -> './autobld/config.guess' + ./configure --build=armv7hl-redhat-linux-gnu --host=armv7hl-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info HAVE_ANTLR=yes --disable-dependency-tracking --includedir=/usr/include/nco checking build system type... armv7hl-redhat-linux-gnu checking host system type... armv7hl-redhat-linux-gnu checking target system type... armv7hl-redhat-linux-gnu ./configure: line 2995: git: command not found checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for armv7hl-redhat-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for armv7hl-redhat-linux-gnu-g++... no checking for armv7hl-redhat-linux-gnu-c++... no checking for armv7hl-redhat-linux-gnu-gpp... no checking for armv7hl-redhat-linux-gnu-aCC... no checking for armv7hl-redhat-linux-gnu-CC... no checking for armv7hl-redhat-linux-gnu-cxx... no checking for armv7hl-redhat-linux-gnu-cc++... no checking for armv7hl-redhat-linux-gnu-cl.exe... no checking for armv7hl-redhat-linux-gnu-FCC... no checking for armv7hl-redhat-linux-gnu-KCC... no checking for armv7hl-redhat-linux-gnu-RCC... no checking for armv7hl-redhat-linux-gnu-xlC_r... no checking for armv7hl-redhat-linux-gnu-xlC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... g++ -E checking for gcc option to accept ISO C99... -std=gnu99 checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99 checking for flex... flex checking lex output file root... lex.yy checking lex library... none needed checking whether yytext is a pointer... no checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc -std=gnu99... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert armv7hl-redhat-linux-gnu file names to armv7hl-redhat-linux-gnu format... func_convert_file_noop checking how to convert armv7hl-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for armv7hl-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for armv7hl-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for armv7hl-redhat-linux-gnu-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for armv7hl-redhat-linux-gnu-strip... no checking for strip... strip checking for armv7hl-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok checking for sysroot... no checking for armv7hl-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes checking if gcc -std=gnu99 static flag -static works... no checking if gcc -std=gnu99 supports -c -o file.o... yes checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes checking whether the gcc -std=gnu99 linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for working memcmp... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for working strtod... yes checking for canonicalize_file_name... yes checking for floor... no checking for gethostname... yes checking for getpagesize... yes checking for getrusage... yes checking for memchr... yes checking for memmove... yes checking for memset... yes checking for mkstemp... yes checking for pow... no checking for readlink... yes checking for realpath... yes checking for regcomp... yes checking for setlocale... yes checking for sqrt... no checking for strchr... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for ANSI C header files... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking cstdlib usability... yes checking cstdlib presence... yes checking for cstdlib... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for ptrdiff_t... yes checking size of int*... 4 checking whether C++ compiler implements namespaces... yes checking whether C++ compiler has working valarray... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 ################################# # Test for netCDF # ################################ checking for /opt/local/include/netcdf.h... no checking for /opt/local/lib/libnetcdf.a... no checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for nc_open in -lnetcdf... yes ################################# # Test for netCDF4 support # ################################# checking whether NC_CHUNKED is declared... yes configure: netcdf.h contains netCDF4 definitions checking for nc_def_var_chunking in -lnetcdf... yes configure: Good news: Simple program compiles and links to netCDF4 library checking netcdf_mem.h usability... no checking netcdf_mem.h presence... no checking for netcdf_mem.h... no checking for gcc -std=gnu99 option to support OpenMP... -fopenmp configure: OpenMP support enabled Beginning generic tests for DAP support Testing for DAP-netCDF support (is DAP in libnetcdf.a?)... checking for daperror in -lnetcdf... yes configure: DAP support enabled checking for getopt_long... yes checking for _g95_ac_array in -lf95... no checking for sin in -lm... yes checking for sinf in -lsunmath... no checking for gettext in -lintl... no checking for res_init in -lresolv... no checking for main in -lsocket... no checking for main in -lthread... no checking for nco_open in -lnco... no checking for nc_inq_format... yes checking for nc_inq_path... yes checking for nc_set_log_level... no checking for getopt... yes checking for getopt_long... (cached) yes checking for atan2... yes checking for acosf... yes checking for asinf... yes checking for atanf... yes checking for atan2f... yes checking for cosf... yes checking for expf... yes checking for fabsf... yes checking for fmodf... yes checking for log10f... yes checking for logf... yes checking for powf... yes checking for sinf... yes checking for sqrtf... yes checking for tanf... yes checking for erff... yes checking for erfcf... yes checking for gammaf... yes checking for acoshf... yes checking for asinhf... yes checking for atanhf... yes checking for coshf... yes checking for sinhf... yes checking for tanhf... yes checking for ceilf... yes checking for floorf... yes checking for nearbyint... yes checking for rint... yes checking for round... yes checking for trunc... yes checking for nearbyintf... yes checking for rintf... yes checking for roundf... yes checking for truncf... yes checking for getopt_long... (cached) yes checking for strdup... yes checking for strcasecmp... yes checking for strsep... yes checking for strcasestr... yes ########################################################## # Sorting out MacOSX build parameters # ########################################################## ################################# # Testing for ANTLR support # ################################# checking for runantlr... yes configure: antlr library was found checking antlr/CommonToken.hpp usability... yes checking antlr/CommonToken.hpp presence... yes checking for antlr/CommonToken.hpp... yes INFO: ANTLR development support found---will build nco++ directory and ncap2 ################################################## # Testing for ESMF support (only for developers) # ################################################## ######################################## # Testing for GSL support # ######################################## configure: These GSL library and header tests must succeed for GSL support: checking for gsl_sf_gamma_inc in -lgsl... yes checking for /usr/include/gsl/gsl_sf_gamma.h... yes configure: GSL support enabled checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking for sys/types.h... (cached) yes checking for regexec... yes checking for regcomp... (cached) yes checking for regfree... yes ######################################## # Testing for UDUNITS support # ######################################## WARNING: Requested both UDUnits and UDUnits2 support---overriding UDUnits Will attempt to build NCO with UDUnits support from libudunits2, not from libudunits checking for XML_ParserCreate in -lexpat... no checking for /usr/include/udunits2/udunits2.h... yes checking for /usr/include/udunits2.h... no checking for /usr/lib/x86_64-linux-gnu/libudunits2.a... no checking for /usr/lib/i386-linux-gnu/libudunits2.a... no checking for /opt/local/include/udunits2/udunits2.h... no checking for /opt/local/lib/libudunits2.a... no checking for /usr/share/udunits/udunits2.xml... yes configure: NB: Following tests of UDUnits2 library and header must succeed for UDUnits2 support: checking for ut_read_xml in -ludunits2... yes checking udunits2.h usability... yes checking udunits2.h presence... yes checking for udunits2.h... yes configure: UDUnits2 support enabled checking for ncgen... /usr/bin/ncgen configure: Creating sample netCDF data files for self-tests ############################### # Require Shared Libs? # ############################### checking for makeinfo... yes MAKEINFO_VERSION=5.1 configure: Documentation support enabled checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating src/Makefile config.status: creating src/nco/Makefile config.status: creating man/Makefile config.status: creating src/nco_c++/Makefile config.status: creating src/nco++/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Parameters: AR_FLAGS............. cru CC................... gcc -std=gnu99 CFLAGS............... -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE CPP.................. gcc -E CPPFLAGS............. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 CXX.................. g++ CXXFLAGS............. -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard ENABLE_DAP........... yes ENABLE_ESMF...........no ENABLE_GSL........... yes ENABLE_LOGGING....... ENABLE_NETCDF4....... yes ENABLE_OPENMP........ yes ENABLE_UDUNITS....... no ENABLE_UDUNITS2...... yes GSL_ROOT............. /usr HAVE_ANTLR........... yes HAVE_MAKEINFO........ yes HAVE_NETCDF4_H....... yes HOST................. HOSTNAME............. LDFLAGS.............. -lnetcdf -Wl,-z,relro LIBS................. -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 NETCDF_ROOT.......... /usr OPENMP_CFLAGS........ -fopenmp host................. armv7hl-redhat-linux-gnu install prefix ...... /usr ******************************************************************* Configuration complete. You are now ready to run 'make'. Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax). If the build fails, please examine the file 'configure.eg' in the top-level NCO directory. It contains examples known to build NCO for various platforms and compilers. ******************************************************************* + make -j4 make all-recursive make[1]: Entering directory `/builddir/build/BUILD/nco-4.7.5' Making all in data make[2]: Entering directory `/builddir/build/BUILD/nco-4.7.5/data' /usr/bin/ncgen -o big.nc big.cdl /usr/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl /builddir/build/BUILD/nco-4.7.5/src/nco/ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc make[2]: /builddir/build/BUILD/nco-4.7.5/src/nco/ncks: Command not found /usr/bin/ncgen -k netCDF-4 -o in_4.nc in.cdl make[2]: [in_4c.nc] Error 127 (ignored) /usr/bin/ncgen -k netCDF-4 -o in_grp_8.nc in_grp_8.cdl /usr/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl /usr/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl /usr/bin/ncgen -k netCDF-4 -o split.nc split.cdl /usr/bin/ncgen -k netCDF-4 -o ref_utf8.nc ref_utf8.cdl make[2]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/data' Making all in src make[2]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src' Making all in nco make[3]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src/nco' gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncatted.o ncatted.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_att_utl.lo nco_att_utl.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_aux.lo nco_aux.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_bnr.lo nco_bnr.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_aux.c -fPIC -DPIC -o .libs/nco_aux.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_att_utl.c -fPIC -DPIC -o .libs/nco_att_utl.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_bnr.c -fPIC -DPIC -o .libs/nco_bnr.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_bnr.c -o nco_bnr.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cln_utl.lo nco_cln_utl.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnf_dmn.lo nco_cnf_dmn.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cln_utl.c -fPIC -DPIC -o .libs/nco_cln_utl.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_dmn.c -fPIC -DPIC -o .libs/nco_cnf_dmn.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_aux.c -o nco_aux.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnf_typ.lo nco_cnf_typ.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_dmn.c -o nco_cnf_dmn.o >/dev/null 2>&1 libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_typ.c -fPIC -DPIC -o .libs/nco_cnf_typ.o nco_cln_utl.c: In function 'nco_cln_var_prs': nco_cln_utl.c:1162:27: warning: 'mss_val_flt' may be used uninitialized in this function [-Wmaybe-uninitialized] if(var->has_mss_val && var->val.fp[idx]==mss_val_flt ){ ^ nco_cln_utl.c:1138:27: warning: 'mss_val_dbl' may be used uninitialized in this function [-Wmaybe-uninitialized] if(var->has_mss_val && var->val.dp[idx]==mss_val_dbl) { ^ libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cln_utl.c -o nco_cln_utl.o >/dev/null 2>&1 libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_att_utl.c -o nco_att_utl.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnk.lo nco_cnk.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnk.c -fPIC -DPIC -o .libs/nco_cnk.o nco_cnk.c: In function 'nco_cnk_csh_ini': nco_cnk.c:158:5: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' [-Wformat=] (void)fprintf(stderr,"%s: INFO %s reports chunk cache size = cnk_csh_byt = %ld B, # of slots in raw data chunk cache has table = nelemsp = %ld, pre-emption favor fraction = pmp_fvr_frc = %g\n",nco_prg_nm_get(),fnc_nm,cnk_csh_byt_crr,nelemsp,pmp_fvr_frc); ^ nco_cnk.c:158:5: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' [-Wformat=] /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnv_arm.lo nco_cnv_arm.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_arm.c -fPIC -DPIC -o .libs/nco_cnv_arm.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_arm.c -o nco_cnv_arm.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnv_csm.lo nco_cnv_csm.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_csm.c -fPIC -DPIC -o .libs/nco_cnv_csm.o nco_cnv_csm.c: In function 'nco_cnv_cf_cll_mth_add': nco_cnv_csm.c:350:9: warning: 'cll_mth_clm' may be used uninitialized in this function [-Wmaybe-uninitialized] att_val=strdup(cll_mth_clm); ^ libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnk.c -o nco_cnk.o >/dev/null 2>&1 libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_csm.c -o nco_cnv_csm.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ctl.lo nco_ctl.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ctl.c -fPIC -DPIC -o .libs/nco_ctl.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_typ.c -o nco_cnf_typ.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_dbg.lo nco_dbg.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dbg.c -fPIC -DPIC -o .libs/nco_dbg.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dbg.c -o nco_dbg.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_dmn_utl.lo nco_dmn_utl.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dmn_utl.c -fPIC -DPIC -o .libs/nco_dmn_utl.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ctl.c -o nco_ctl.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_fl_utl.lo nco_fl_utl.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_fl_utl.c -fPIC -DPIC -o .libs/nco_fl_utl.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dmn_utl.c -o nco_dmn_utl.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_grp_utl.lo nco_grp_utl.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_utl.c -fPIC -DPIC -o .libs/nco_grp_utl.o /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_grp_trv.lo nco_grp_trv.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_trv.c -fPIC -DPIC -o .libs/nco_grp_trv.o nco_grp_utl.c: In function 'nco_cpy_var_dfn_trv': nco_grp_utl.c:4949:5: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' [-Wformat=] for(int idx_dmn=0;idx_dmn elements %ld\n",nco_prg_nm_get(),fnc_nm,var_trv->nm_fll,lmn_cnt); ^ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_lmt.lo nco_lmt.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lmt.c -fPIC -DPIC -o .libs/nco_lmt.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_fl_utl.c -o nco_fl_utl.o >/dev/null 2>&1 libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_trv.c -o nco_grp_trv.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_lst_utl.lo nco_lst_utl.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lst_utl.c -fPIC -DPIC -o .libs/nco_lst_utl.o nco_lst_utl.c: In function 'nco_fmt_sng_printf_subst': nco_lst_utl.c:38:23: warning: unknown escape sequence: '\.' [enabled by default] const char rx_sng[]="%([+-0#'I])?([0-9]*)?([\.?[0-9]*)?([h+l+Ljzt])?[bcdeEfFgGiosuxX]"; /* [sng] Regular expression pattern */ ^ libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lmt.c -o nco_lmt.o >/dev/null 2>&1 libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lst_utl.c -o nco_lst_utl.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_map.lo nco_map.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_map.c -fPIC -DPIC -o .libs/nco_map.o nco_map.c: In function 'nco_map_mk': nco_map.c:440:3: warning: format '%li' expects argument of type 'long int', but argument 4 has type 'size_t' [-Wformat=] if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stdout,"%s: INFO Defining mapfile based on %li links\n",nco_prg_nm_get(),lnk_nbr); ^ nco_map.c:398:9: warning: variable 'fl_out_tmp' set but not used [-Wunused-but-set-variable] char *fl_out_tmp=NULL_CEWI; ^ nco_map.c:274:12: warning: variable 'flg_grd_out_rct' set but not used [-Wunused-but-set-variable] nco_bool flg_grd_out_rct=False; /* [flg] Rectangular coordinates */ ^ nco_map.c:272:12: warning: variable 'flg_grd_in_rct' set but not used [-Wunused-but-set-variable] nco_bool flg_grd_in_rct=False; /* [flg] Rectangular coordinates */ ^ nco_map.c:208:7: warning: variable 'bnd_nbr_out' set but not used [-Wunused-but-set-variable] int bnd_nbr_out; /* [nbr] Number of vertices for destination grid coordinates */ ^ nco_map.c:190:8: warning: variable 'col_nbr_in' set but not used [-Wunused-but-set-variable] long col_nbr_in; /* [idx] Number of columns in source grid */ ^ nco_map.c:189:7: warning: variable 'bnd_nbr_in' set but not used [-Wunused-but-set-variable] int bnd_nbr_in; /* [nbr] Number of vertices for source grid coordinates */ ^ nco_map.c:27:16: warning: unused variable 'eps_rlt' [-Wunused-variable] const double eps_rlt=1.0e-14; /* [frc] Round-off error tolerance */ ^ nco_map.c:26:16: warning: unused variable 'dgr2rdn' [-Wunused-variable] const double dgr2rdn=M_PI/180.0; ^ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_md5.lo nco_md5.c nco_map.c:367:8: warning: 'lon_nbr_out' may be used uninitialized in this function [-Wmaybe-uninitialized] if(idx%lon_nbr_out == 0) idx_tst=idx; ^ nco_map.c:351:8: warning: 'lon_nbr_in' may be used uninitialized in this function [-Wmaybe-uninitialized] if(idx%lon_nbr_in == 0) idx_tst=idx; ^ libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_md5.c -fPIC -DPIC -o .libs/nco_md5.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_md5.c -o nco_md5.o >/dev/null 2>&1 libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_map.c -o nco_map.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mmr.lo nco_mmr.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_msa.lo nco_msa.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mmr.c -fPIC -DPIC -o .libs/nco_mmr.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_msa.c -fPIC -DPIC -o .libs/nco_msa.o nco_mmr.c: In function 'nco_malloc': nco_mmr.c:106:3: warning: format '%lu' expects argument of type 'long unsigned int', but argument 9 has type 'long long unsigned int' [-Wformat=] if(sz > sz_max) (void)fprintf(stdout,"%s: WARNING %s received request to allocate %lu B = %lu kB = %lu MB = %lu GB = %lu TB\n",nco_prg_nm_get(),fnc_nm,(unsigned long)sz,(unsigned long)sz/NCO_BYT_PER_KB,(unsigned long)sz/NCO_BYT_PER_MB,(unsigned long)sz/NCO_BYT_PER_GB,(unsigned long)sz/NCO_BYT_PER_TB); ^ libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mmr.c -o nco_mmr.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mss_val.lo nco_mss_val.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mss_val.c -fPIC -DPIC -o .libs/nco_mss_val.o /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mta.lo nco_mta.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mta.c -fPIC -DPIC -o .libs/nco_mta.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mss_val.c -o nco_mss_val.o >/dev/null 2>&1 libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mta.c -o nco_mta.o >/dev/null 2>&1 libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_msa.c -o nco_msa.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_netcdf.lo nco_netcdf.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_netcdf.c -fPIC -DPIC -o .libs/nco_netcdf.o /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_omp.lo nco_omp.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_omp.c -fPIC -DPIC -o .libs/nco_omp.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_omp.c -o nco_omp.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_pck.lo nco_pck.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_pck.c -fPIC -DPIC -o .libs/nco_pck.o /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ppc.lo nco_ppc.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ppc.c -fPIC -DPIC -o .libs/nco_ppc.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_pck.c -o nco_pck.o >/dev/null 2>&1 libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ppc.c -o nco_ppc.o >/dev/null 2>&1 libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_netcdf.c -o nco_netcdf.o >/dev/null 2>&1 libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_utl.c -o nco_grp_utl.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_prn.lo nco_prn.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_prn.c -fPIC -DPIC -o .libs/nco_prn.o /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rec_var.lo nco_rec_var.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rec_var.c -fPIC -DPIC -o .libs/nco_rec_var.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rec_var.c -o nco_rec_var.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rgr.lo nco_rgr.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rgr.c -fPIC -DPIC -o .libs/nco_rgr.o nco_rgr.c: In function 'nco_rgr_wgt': nco_rgr.c:1623:5: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'size_t' [-Wformat=] for(lnk_idx=0;lnk_idx= nco_dbg_std) (void)fprintf(fp_stdout,"Extensive variable %s: dst_idx = %li, tally = %d, val_out_b4 = %g, wgt_vld_out = %g, val_out_after = %g\n",trv.nm,dst_idx,tally[dst_idx],var_val_dbl_out[dst_idx],wgt_vld_out[dst_idx],var_val_dbl_out[dst_idx]*wgt_vld_out[dst_idx]); ^ nco_rgr.c: In function 'nco_sph_plg_area': nco_rgr.c:3994:9: warning: variable 'ngl_ltr_c' set but not used [-Wunused-but-set-variable] double ngl_ltr_c; /* [rdn] Interior angle/great circle arc c, canonical latitude-triangle geometry */ ^ nco_rgr.c:3993:9: warning: variable 'ngl_ltr_b' set but not used [-Wunused-but-set-variable] double ngl_ltr_b; /* [rdn] Interior angle/great circle arc b, canonical latitude-triangle geometry */ ^ nco_rgr.c:3992:9: warning: variable 'ngl_ltr_a' set but not used [-Wunused-but-set-variable] double ngl_ltr_a; /* [rdn] Interior angle/small circle arc a, canonical latitude-triangle geometry */ ^ libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_flt.c -fPIC -DPIC -o .libs/nco_rth_flt.o nco_rgr.c: In function 'nco_grd_nfr': nco_rgr.c:6821:6: warning: format '%li' expects argument of type 'long int', but argument 5 has type 'size_t' [-Wformat=] if(wrn_nbr == wrn_nbr_max) (void)fprintf(stdout,"%s: %s INFO Number of non-CCW errors reached maximum = %li, not printing anymore\n",nco_prg_nm_get(),fnc_nm,wrn_nbr_max); ^ libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_flt.c -o nco_rth_flt.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rth_utl.lo nco_rth_utl.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_utl.c -fPIC -DPIC -o .libs/nco_rth_utl.o nco_prn.c: In function 'nco_prn_var_dfn': nco_prn.c:1719:43: warning: 'vln_lng_avg' may be used uninitialized in this function [-Wmaybe-uninitialized] if(cls_typ == NC_VLEN) (void)fprintf(fp_out," // RAM size = %s = %li*%g*%lu = %lu bytes",sz_sng,var_sz,vln_lng_avg,(unsigned long)nco_typ_lng_ntm(nc_id,bs_typ),(unsigned long)ram_sz_crr); else (void)fprintf(fp_out," // RAM size = %s = %li*%lu = %lu bytes",sz_sng,var_sz,(unsigned long)nco_typ_lng_ntm(nc_id,bs_typ),(unsigned long)ram_sz_crr); ^ nco_prn.c: In function 'nco_prn_att': nco_prn.c:678:7: warning: 'mbr_val' may be used uninitialized in this function [-Wmaybe-uninitialized] rcd=nco_inq_enum_ident(grp_id,att[idx].type,mbr_val,mbr_nm); ^ libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_utl.c -o nco_rth_utl.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_scl_utl.lo nco_scl_utl.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scl_utl.c -fPIC -DPIC -o .libs/nco_scl_utl.o nco_rgr.c: In function 'nco_rgr_ini': nco_rgr.c:394:9: warning: 'cnv_nbr' may be used uninitialized in this function [-Wmaybe-uninitialized] if(cnv_nbr != 4) cnv_nbr=sscanf(rgr_lst[rgr_var_idx].val,"%lf,%lf,%lf,%lf",&rgr->lon_wst,&rgr->lon_est,&rgr->lat_sth,&rgr->lat_nrt); ^ nco_prn.c: In function 'nco_prn_var_val_trv': nco_prn.c:2353:74: warning: 'vln_lngm1' may be used uninitialized in this function [-Wmaybe-uninitialized] case NC_UINT64: for(vln_idx=0;vln_idx/dev/null 2>&1 nco_prn.c:2375:22: warning: 'mbr_val' may be used uninitialized in this function [-Wmaybe-uninitialized] nco_inq_enum_ident(nc_id,var->type,mbr_val,mbr_nm); ^ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_scm.lo nco_scm.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scm.c -fPIC -DPIC -o .libs/nco_scm.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scm.c -o nco_scm.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_sld.lo nco_sld.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sld.c -fPIC -DPIC -o .libs/nco_sld.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sld.c -o nco_sld.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_sng_utl.lo nco_sng_utl.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sng_utl.c -fPIC -DPIC -o .libs/nco_sng_utl.o nco_sng_utl.c: In function 'sng2sng_sf': nco_sng_utl.c:491:8: warning: unused variable 'sng_lngm1' [-Wunused-variable] long sng_lngm1=long_CEWI; /* [nbr] Length minus one of NC_CHAR string */ ^ libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_prn.c -o nco_prn.o >/dev/null 2>&1 libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sng_utl.c -o nco_sng_utl.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_srm.lo nco_srm.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_srm.c -fPIC -DPIC -o .libs/nco_srm.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_srm.c -o nco_srm.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_avg.lo nco_var_avg.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_avg.c -fPIC -DPIC -o .libs/nco_var_avg.o /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_lst.lo nco_var_lst.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_lst.c -fPIC -DPIC -o .libs/nco_var_lst.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_avg.c -o nco_var_avg.o >/dev/null 2>&1 libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_lst.c -o nco_var_lst.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_rth.lo nco_var_rth.c /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_scv.lo nco_var_scv.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_rth.c -fPIC -DPIC -o .libs/nco_var_rth.o libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_scv.c -fPIC -DPIC -o .libs/nco_var_scv.o /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_utl.lo nco_var_utl.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_utl.c -fPIC -DPIC -o .libs/nco_var_utl.o nco_rgr.c: In function 'nco_grd_nfr': nco_rgr.c:7136:7: warning: 'lon_typ' may be used uninitialized in this function [-Wmaybe-uninitialized] if(lon_typ == nco_grd_lon_nil){ ^ nco_rgr.c:7021:7: warning: 'lat_typ' may be used uninitialized in this function [-Wmaybe-uninitialized] if(lat_typ == nco_grd_lat_nil){ ^ nco_rgr.c:7412:17: warning: 'msk_unn.vp' may be used uninitialized in this function [-Wmaybe-uninitialized] if(msk_unn.ip[idx] == mss_val_int || msk_unn.ip[idx] == 0) msk[idx]=0; ^ libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_scv.c -o nco_var_scv.o >/dev/null 2>&1 libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_utl.c -o nco_var_utl.o >/dev/null 2>&1 gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncbo.o ncbo.c libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_rth.c -o nco_var_rth.o >/dev/null 2>&1 gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncecat.o ncecat.c gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncflint.o ncflint.c gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncks.o ncks.c gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncpdq.o ncpdq.c ncks.c: In function 'main': ncks.c:182:8: warning: 'in_id_arr' may be used uninitialized in this function [-Wmaybe-uninitialized] int *in_id_arr; /* [id] netCDF file IDs used by OpenMP code */ ^ ncks.c:1404:50: warning: 'fl_lst_in' may be used uninitialized in this function [-Wmaybe-uninitialized] if(fl_lst_in && fl_lst_abb == NULL) fl_lst_in=nco_sng_lst_free(fl_lst_in,fl_nbr); ^ libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rgr.c -o nco_rgr.o >/dev/null 2>&1 gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncra.o ncra.c gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncrename.o ncrename.c ncrename.c: In function 'main': ncrename.c:530:5: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'size_t' [-Wformat=] if(nco_dbg_lvl_get() >= nco_dbg_io) (void)fprintf(stdout,"%s: att_rnm_lst[].old_nm = \"%s\", obj_nm = \"%s\", att_is_opt = %d, att_mch_fst = %ld, obj_is_opt = %d, obj_mch_fst = %ld, mch_fll_nm = %d, mch_grp_all = %d, mch_grp_glb = %d, mch_obj_all = %d\n",nco_prg_nm,att_rnm_lst[idx_att].old_nm,obj_nm,att_is_opt,att_mch_fst,obj_is_opt,obj_mch_fst,mch_fll_nm,mch_grp_all,mch_grp_glb,mch_obj_all); ^ ncrename.c:530:5: warning: format '%ld' expects argument of type 'long int', but argument 9 has type 'size_t' [-Wformat=] gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncwa.o ncwa.c gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncap_utl.o ncap_utl.c test -f ncap_lex.c || /bin/sh ../../autobld/ylwrap ncap_lex.l lex.nco_yy.c ncap_lex.c -- flex -Pnco_yy gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncap_lex.o ncap_lex.c ncap_lex.c:2724:16: warning: 'input' defined but not used [-Wunused-function] static int input (void) ^ /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -std=gnu99 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -release 4.7.5 -lnetcdf -Wl,-z,relro -o libnco.la -rpath /usr/lib nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_grp_utl.lo nco_grp_trv.lo nco_lmt.lo nco_lst_utl.lo nco_map.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_mta.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.8.5/../../../crti.o /usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.8.5/crtbeginS.o .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o 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-f "libnco.so" && ln -s "libnco-4.7.5.so" "libnco.so") libtool: link: ar cru .libs/libnco.a nco_att_utl.o nco_aux.o nco_bnr.o nco_cln_utl.o nco_cnf_dmn.o nco_cnf_typ.o nco_cnk.o nco_cnv_arm.o nco_cnv_csm.o nco_ctl.o nco_dbg.o nco_dmn_utl.o nco_fl_utl.o nco_grp_utl.o nco_grp_trv.o nco_lmt.o nco_lst_utl.o nco_map.o nco_md5.o nco_mmr.o nco_msa.o nco_mss_val.o nco_mta.o nco_netcdf.o nco_omp.o nco_pck.o nco_ppc.o nco_prn.o nco_rec_var.o nco_rgr.o nco_rth_flt.o nco_rth_utl.o nco_scl_utl.o nco_scm.o nco_sld.o nco_sng_utl.o nco_srm.o nco_var_avg.o nco_var_lst.o nco_var_rth.o nco_var_scv.o nco_var_utl.o libtool: link: ranlib .libs/libnco.a libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" ) /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -std=gnu99 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 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--mode=link gcc -std=gnu99 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -lnetcdf -Wl,-z,relro -o ncks ncks.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -std=gnu99 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -lnetcdf -Wl,-z,relro -o ncpdq ncpdq.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -std=gnu99 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 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-lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp libtool: link: gcc -std=gnu99 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -o .libs/ncks ncks.o ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp libtool: link: gcc -std=gnu99 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -o .libs/ncra ncra.o ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp libtool: link: gcc -std=gnu99 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard 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-fopenmp make[3]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src/nco' Making all in nco_c++ make[3]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src/nco_c++' /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o libnco_c___la-nco_att.lo `test -f 'nco_att.cc' || echo './'`nco_att.cc /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o libnco_c___la-nco_dmn.lo `test 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-fPIC -DPIC -o .libs/libnco_c___la-nco_fl.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c nco_hgh.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_hgh.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c nco_hgh.cc -o libnco_c___la-nco_hgh.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions 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-I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o libnco_c___la-nco_utl.lo `test -f 'nco_utl.cc' || echo './'`nco_utl.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c nco_utl.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_utl.o /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o libnco_c___la-nco_var.lo `test -f 'nco_var.cc' || echo './'`nco_var.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c nco_var.cc -fPIC -DPIC -o .libs/libnco_c___la-nco_var.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c nco_utl.cc -o libnco_c___la-nco_utl.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -DABORT_ON_ERROR -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c nco_var.cc -o libnco_c___la-nco_var.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -release 4.7.5 -lnetcdf -Wl,-z,relro -o libnco_c++.la -rpath /usr/lib libnco_c___la-nco_att.lo libnco_c___la-nco_dmn.lo libnco_c___la-nco_fl.lo libnco_c___la-nco_hgh.lo libnco_c___la-nco_utl.lo libnco_c___la-nco_var.lo -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.8.5/../../../crti.o /usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.8.5/crtbeginS.o .libs/libnco_c___la-nco_att.o .libs/libnco_c___la-nco_dmn.o .libs/libnco_c___la-nco_fl.o .libs/libnco_c___la-nco_hgh.o .libs/libnco_c___la-nco_utl.o .libs/libnco_c___la-nco_var.o -lnetcdf -lcurl -lgsl -lgslcblas -ludunits2 -L/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.8.5 -L/usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.8.5/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.8.5/crtendS.o /usr/lib/gcc/armv7hl-redhat-linux-gnueabi/4.8.5/../../../crtn.o -O2 -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z -Wl,relro -Wl,-soname -Wl,libnco_c++-4.7.5.so -o .libs/libnco_c++-4.7.5.so libtool: link: (cd ".libs" && rm -f "libnco_c++.so" && ln -s "libnco_c++-4.7.5.so" "libnco_c++.so") libtool: link: ar cru .libs/libnco_c++.a libnco_c___la-nco_att.o libnco_c___la-nco_dmn.o libnco_c___la-nco_fl.o libnco_c___la-nco_hgh.o libnco_c___la-nco_utl.o libnco_c___la-nco_var.o libtool: link: ranlib .libs/libnco_c++.a libtool: link: ( cd ".libs" && rm -f "libnco_c++.la" && ln -s "../libnco_c++.la" "libnco_c++.la" ) make[3]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src/nco_c++' Making all in nco++ make[3]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o Invoke.o Invoke.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o ncap2.o ncap2.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o ncap2_utl.o ncap2_utl.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o ncap2_att.o ncap2_att.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o sdo_utl.o sdo_utl.cc Invoke.cc: In function 'int parse_antlr(std::vector&, char*, char*)': Invoke.cc:131:7: warning: 'iret' may be used uninitialized in this function [-Wmaybe-uninitialized] int iret; ^ g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o sym_cls.o sym_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o fmc_cls.o fmc_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o fmc_all_cls.o fmc_all_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o fmc_gsl_cls.o fmc_gsl_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o prs_cls.o prs_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o NcapVar.o NcapVar.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o NcapVarVector.o NcapVarVector.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o ncoLexer.o ncoLexer.cpp fmc_gsl_cls.cc: In member function 'var_sct* gsl_fit_cls::fit_est_fnd(bool&, std::vector >&, fmc_cls&, ncoTree&)': fmc_gsl_cls.cc:4988:13: warning: 'mss_val_dbl' may be used uninitialized in this function [-Wmaybe-uninitialized] if(var_out->val.dp[jdx] != mss_val_dbl) ^ g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o ncoParser.o ncoParser.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -c -o ncoTree.o ncoTree.cpp gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -I/usr/include -I/usr/include/udunits2 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_gsl.o nco_gsl.c /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -L../nco -lnco -lantlr -lgsl -lgslcblas -lm -lnetcdf -Wl,-z,relro -o ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -march=armv7-a -mfpu=vfpv3-d16 -mfloat-abi=hard -Wl,-z -Wl,relro -o .libs/ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -L../nco /builddir/build/BUILD/nco-4.7.5/src/nco/.libs/libnco.so -lantlr -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp make[3]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src/nco++' make[3]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src' make[2]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src' Making all in man make[2]: Entering directory `/builddir/build/BUILD/nco-4.7.5/man' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/man' Making all in doc make[2]: Entering directory `/builddir/build/BUILD/nco-4.7.5/doc' restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/sh /builddir/build/BUILD/nco-4.7.5/autobld/missing makeinfo --version) >/dev/null 2>&1; then \ for f in nco.info nco.info-[0-9] nco.info-[0-9][0-9] nco.i[0-9] nco.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/sh /builddir/build/BUILD/nco-4.7.5/autobld/missing makeinfo -I . \ -o nco.info nco.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./nco.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc make[2]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/doc' make[2]: Entering directory `/builddir/build/BUILD/nco-4.7.5' make[2]: Leaving directory `/builddir/build/BUILD/nco-4.7.5' make[1]: Leaving directory `/builddir/build/BUILD/nco-4.7.5' + make -C doc html pdf make: Entering directory `/builddir/build/BUILD/nco-4.7.5/doc' rm -rf nco.htp if /bin/sh /builddir/build/BUILD/nco-4.7.5/autobld/missing makeinfo --html --ifinfo --no-split -I . \ -o nco.htp nco.texi; \ then \ rm -rf nco.html && mv nco.htp nco.html; \ else \ rm -rf nco.htp; exit 1; \ fi TEXINPUTS="../autobld:$TEXINPUTS" \ MAKEINFO='/bin/sh /builddir/build/BUILD/nco-4.7.5/autobld/missing makeinfo -I .' \ texi2dvi --pdf --batch --build-dir=nco.t2p -o nco.pdf \ nco.texi This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/nco-4.7.5/doc/./nco.texi (/builddir/build/BUILD/nco-4.7.5/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/builddir/build/BUILD/nco-4.7.5/doc/my-bib-macros.texi) [1{/usr/share/texlive/ texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] [-2] (Foreword) [1] (Summary) [2] [3] [4] Chapter 1 [5] [6] Cross reference values unknown; you must run TeX again. [7] [8] [9] [10] [11] [12] [13] Overfull \hbox (32.18782pt too wide) in paragraph at lines 1381--1381 []@texttt ncks fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.4.0+, netCDF 4.3.1+)[] [14] [15] Chapter 2 [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 3 [27] [28] [29] [30] [31] [32] Overfull \hbox (55.18257pt too wide) in paragraph at lines 3037--3037 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3065--3065 [][] [33] [34] [35] [36] [37] [38] [39] Overfull \hbox (95.42339pt too wide) in paragraph at lines 3759--3759 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface \[] [40] Overfull \hbox (382.85777pt too wide) in paragraph at lines 3806--3806 []@texttt ncks -v Time -d Time,0,10,2 http://eosdap.hdfgroup.uiuc.edu:8080/ope ndap/data/NASAFILES/hdf5/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5[] Overfull \hbox (658.79478pt too wide) in paragraph at lines 3808--3808 []@texttt ncks -O -D 1 -d time,1 -d lev,0 -d lat,0,100,10 -d lon,0,100,10 -v u _velocity http://nomads.ncep.noaa.gov:9090/dods/rtofs/rtofs_global20140303/rtof s_glo_2ds_forecast_daily_prog ~/foo.nc[] [41] Overfull \hbox (95.42339pt too wide) in paragraph at lines 3881--3881 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface \[] [42] [43] [44] [45] [46] Overfull \hbox (37.93651pt too wide) in paragraph at lines 4283--4283 []@texttt # Convert file with groups, multiple record dimensions + netCDF4 ato mic types[] [47] [48] [49] [50] [51] [52] [53] [54] [55] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5028--5028 []@texttt ncks -O -G : -g cesm -3 ~/nco/data/cmip5.nc ~/cesm.nc # Extract /ces m to /[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5183--5183 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5183--5183 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 5183--5183 [][] Overfull \hbox (49.43388pt too wide) in paragraph at 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Overfull \hbox (43.6852pt too wide) in paragraph at lines 10363--10363 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [124] [125] [126] [127] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10742--10742 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10743--10743 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 10744--10744 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 10745--10745 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i n.nc ~/foo.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10753--10753 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [128] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10795--10795 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [129] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10870--10870 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc[] [130] [131] [132] Overfull \hbox (32.18782pt too wide) in paragraph at lines 11058--11058 []@texttt ncap2 -s 'tpt=tpt.convert(NC_SHORT);prs=prs.convert(NC_DOUBLE)' in.n c out.nc[] [133] [134] Overfull \hbox (112.66945pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 11258--11258 [][] 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indicate dimension size is fixed[] [149] [150] Overfull \hbox (89.6747pt too wide) in paragraph at lines 12428--12428 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12465--12465 []@texttt (A) var_out=array(val_srt, val_inc, $dmn_nm); // One-dimen sional output[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 12466--12466 []@texttt (B) var_out=array(val_srt, val_inc, var_tpl); // Multi-dim ensional output[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 12467--12467 []@texttt (C) var_out=array(val_srt, val_inc, /$dmn1,$dmn2...,$dmnN/); // Mult i-dimensional output[] [151] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12484--12484 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24 .5,26.5,28.5[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12513--12513 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [152] [153] [154] [155] Overfull \hbox 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[168] [169] Underfull \hbox (badness 10000) in paragraph at lines 13681--13690 []@textrm Consider ir-reg-u- Overfull \hbox (49.43388pt too wide) in paragraph at lines 13700--13700 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 13742--13742 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13742--13742 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 13742--13742 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13742--13742 [][] [170] [171] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13833--13833 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13858--13858 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [172] [173] [174] [175] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14060--14060 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14077--14077 [] @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re sizes)[] [176] [177] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14205--14205 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14205--14205 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14205--14205 [][] [178] Overfull \hbox (187.40239pt too wide) in paragraph at lines 14213--14213 [][] [179] Overfull \hbox (175.90501pt too wide) in paragraph at lines 14325--14325 [][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14325--14325 [][] [180] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14337--14337 [][] [181] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14456--14456 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 14473--14473 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);[] [182] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14506--14506 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [183] [184] [185] [186] Overfull \hbox (12.86244pt too wide) in paragraph at lines 14790--14791 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 14798--14799 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 14802--14803 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 14806--14807 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 14810--14811 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 14826--14827 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 14831--14832 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 14849--14849 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 14850--14850 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 14857--14857 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 14882--14883 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 14961--14962 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 14962--14963 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 14963--14964 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 14964--14964 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 14964--14965 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 14973--14974 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 14982--14983 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 14983--14983 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 14985--14986 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 14986--14986 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 15047--15047 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [187] [188] [189] [190] [191] [192] [193] Underfull \hbox (badness 10000) in paragraph at lines 15121--15123 []@texttt status=@textbf gsl[]fit[]linear [194] Underfull \hbox (badness 10000) in paragraph at lines 15134--15135 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ Underfull \hbox (badness 10000) in paragraph at lines 15152--15153 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ Overfull \hbox (14.94176pt too wide) in paragraph at lines 15178--15178 [][] [195] Overfull \hbox (158.65895pt too wide) in paragraph at lines 15206--15206 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 15206--15206 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 15206--15206 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 15223--15223 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 15224--15224 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 15225--15225 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] [196] Overfull \hbox (14.94176pt too wide) in paragraph at lines 15232--15232 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 15233--15233 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 15234--15234 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [197] [198] Overfull \hbox (175.90501pt too wide) in paragraph at lines 15340--15340 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15342--15342 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [199] [200] [201] [202] Underfull \hbox (badness 10000) in paragraph at lines 15865--15881 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 15925--15941 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: [203] Underfull \hbox (badness 10000) in paragraph at lines 16011--16021 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [204] [205] Overfull \hbox (26.43913pt too wide) in paragraph at lines 16220--16220 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16220--16220 [][] [206] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16298--16298 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16304--16304 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] Overfull \hbox (37.93651pt too wide) in paragraph at lines 17351--17351 []@texttt [-E @textttsl yr_prv@texttt ] [-e @textttsl yr_end@texttt ] [-f @tex tttsl fml_nm@texttt ] [--fl_fmt=@textttsl fl_fmt@texttt ] [-h @textttsl hst_nm@ texttt ] [-i @textttsl drc_in@texttt ][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 17383--17383 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [220] [221] [222] [223] [224] Overfull \hbox (38.26584pt too wide) in paragraph at lines 17938--17938 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 17939--17939 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [225] [226] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18094--18094 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18096--18096 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [227] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18162--18162 [][] [228] Overfull \hbox (37.93651pt too wide) in paragraph at lines 18207--18207 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [229] Underfull 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[-F] [--fix_rec_crd] [-G @textttsl gpe_dsc@texttt ] [-g @textttsl gr p@texttt [,[]]] [--glb ...] [-h] [--hdr_pad @textttsl nbr@texttt ][] [245] [246] Overfull \hbox (43.6852pt too wide) in paragraph at lines 19679--19679 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [247] [248] [249] Overfull \hbox (32.51715pt too wide) in paragraph at lines 19932--19932 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 19933--19933 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at lines 19936--19936 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n c[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 19937--19937 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only [] [250] [251] Overfull \hbox (147.4909pt too wide) in paragraph at lines 20125--20125 [][] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20146--20146 [][] [252] Overfull \hbox (55.5119pt too wide) in paragraph at lines 20159--20159 []@texttt /usr/hdf4/bin/ncgen -b -o ~/in.hdf ~/in.cdl # HDF ncgen (local build s)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20160--20160 []@texttt /usr/bin/hncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (RPM packages?)[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20161--20161 []@texttt /usr/bin/h4_ncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Ana conda)[] Overfull \hbox (124.49615pt too wide) in paragraph at lines 20162--20162 []@texttt /usr/bin/ncgen-hdf -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Deb ian packages?)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20163--20163 []@texttt hdp dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20164--20164 []@texttt h4_ncdump 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[][] [260] Overfull \hbox (147.4909pt too wide) in paragraph at lines 20870--20870 [][] Overfull \hbox (285.45941pt too wide) in paragraph at lines 20870--20870 [][] Underfull \hbox (badness 10000) in paragraph at lines 20885--20900 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc edrm NcML[] @textrm out-put: Overfull \hbox (44.01453pt too wide) in paragraph at lines 20918--20918 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 20918--20918 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 20918--20918 [][] [261] Overfull \hbox (26.76846pt too wide) in paragraph at lines 20918--20918 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20988--20988 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/ /' | sort[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 21001--21001 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort[] 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paragraph at lines 21107--21107 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 21107--21107 [][] [264] Overfull \hbox (26.43913pt too wide) in paragraph at lines 21187--21187 []@texttt # Change values to be sure original values are not copied in followi ng step[] [265] [266] [267] Overfull \hbox (32.18784pt too wide) in paragraph at lines 21406--21406 []@texttt [-R] [-r] [--ram_all] [-t @textttsl thr_nbr@texttt ] [-U] [--unn] [- v @textttsl var@texttt [,[]]] [-X ...] [-x][] [268] [269] [270] [271] [272] [273] [274] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21938--21938 []@texttt ncecat -O -u time in.nc out.nc # Create degenerate record dimension named "time"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21951--21951 []@texttt ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dim ension[] [275] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22000--22000 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl 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msk_dst@texttt ] [--msk_out=@textttsl msk_out@t exttt ] [--msk_src=@textttsl msk_src@texttt ] [--mss_val=@textttsl mss_val@text tt ][] [282] [283] Overfull \hbox (61.26059pt too wide) in paragraph at lines 22592--22592 [][] Underfull \hbox (badness 10000) in paragraph at lines 22599--22600 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 22601--22605 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 22606--22607 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 22610--22611 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv [284] Overfull \hbox (55.5119pt too wide) in paragraph at lines 22658--22658 []@texttt ncremap --a2o -a se2fv_flx --src_grd=atm.nc --dst_grd=ocn.nc -m map. nc[] Overfull \hbox (55.5119pt too wide) in paragraph at lines 22660--22660 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(106.92076pt too wide) in paragraph at lines 24501--24501 [][] [306] [307] Overfull \hbox (49.4339pt too wide) in paragraph at lines 24576--24576 []@texttt ncwa [-3] [-4] [-5] [-6] [-7] [-A] [-a @textttsl dim@texttt [,[]]] [ -B @textttsl mask_cond@texttt ] [-b] [-C] [-c][] Underfull \hbox (badness 10000) in paragraph at lines 24583--24583 []@texttt [-O] [-o @textttsl output- [308] [309] [310] [311] Chapter 5 [312] [313] [314] [315] Chapter 6 [316] [317] Chapter 7 [318] (/builddir/build/BUILD/nco-4.7.5/doc/xmp/cmb_fl.sh Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] [319] Overfull \hbox (32.18782pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 46--46 [][] [320] Overfull \hbox (55.18257pt too wide) in paragraph at lines 56--56 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 70--70 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 74--74 [][] Overfull \hbox (37.93651pt too wide) in 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\hbox (60.93126pt too wide) in paragraph at lines 26--26 [][][][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 27--27 [][][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 32--32 [][] ) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/crd.nco Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] ) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/pmt_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [342] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [343] [344] Overfull \hbox (60.93126pt too wide) in paragraph at lines 25894--25894 [][] Chapter 9 [345] [346] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26204--26204 [][] [347] [348] [349] [350] Overfull \hbox (37.93651pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 26204--26204 [][] [351] Overfull \hbox (693.28691pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26204--26204 [][] [352] Chapter 10 [353] [354] (General Index) [355] [356] [357] [358] ) (see the transcript file for additional information) Output written on nco.pdf (362 pages, 1379326 bytes). Transcript written on nco.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/nco-4.7.5/doc/./nco.texi (/builddir/build/BUILD/nco-4.7.5/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./nco.aux) (/builddir/build/BUILD/nco-4.7.5/doc/my-bib-macros.texi) [1{/usr/share/texlive/ texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./nco.toc [-1] [-2] [-3] [-4]) [-5] [-6] (./nco.toc) (./nco.toc) (Foreword) [1] (Summary) [2] [3] [4] Chapter 1 [5] [6] [7] [8] [9] [10] [11] [12] Overfull \hbox (32.18782pt too wide) in paragraph at lines 1381--1381 []@texttt ncks fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.4.0+, netCDF 4.3.1+)[] [13] [14] [15] Chapter 2 [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 3 [27] [28] [29] [30] [31] [32] Overfull \hbox (55.18257pt too wide) in paragraph at lines 3037--3037 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3065--3065 [][] [33] [34] [35] [36] [37] [38] [39] Overfull \hbox (95.42339pt too wide) in paragraph at lines 3759--3759 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface \[] [40] Overfull \hbox (382.85777pt too wide) in paragraph at lines 3806--3806 []@texttt ncks -v Time -d Time,0,10,2 http://eosdap.hdfgroup.uiuc.edu:8080/ope ndap/data/NASAFILES/hdf5/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5[] Overfull \hbox (658.79478pt too wide) in paragraph at lines 3808--3808 []@texttt ncks -O -D 1 -d time,1 -d lev,0 -d lat,0,100,10 -d lon,0,100,10 -v u _velocity http://nomads.ncep.noaa.gov:9090/dods/rtofs/rtofs_global20140303/rtof s_glo_2ds_forecast_daily_prog ~/foo.nc[] [41] Overfull \hbox (95.42339pt too wide) in paragraph at lines 3881--3881 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface \[] [42] [43] [44] [45] [46] Overfull \hbox (37.93651pt too wide) in paragraph at lines 4283--4283 []@texttt # Convert file with groups, multiple record dimensions + netCDF4 ato mic types[] [47] [48] [49] [50] [51] [52] [53] [54] [55] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5028--5028 []@texttt ncks -O -G : -g cesm -3 ~/nco/data/cmip5.nc ~/cesm.nc # Extract /ces m to /[] Overfull \hbox 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paragraph at lines 9692--9692 [][] [116] [117] [118] [119] [120] [121] [122] Overfull \hbox (20.69044pt too wide) in paragraph at lines 10356--10356 [] @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size- 1))' \[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10363--10363 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [123] [124] [125] [126] [127] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10742--10742 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10743--10743 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 10744--10744 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 10745--10745 []@texttt 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.5,26.5,28.5[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12513--12513 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [152] [153] [154] [155] Overfull \hbox (118.41814pt too wide) in paragraph at lines 12785--12785 [][] [156] [157] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12889--12889 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12908--12908 [][] [158] [159] [160] Overfull \hbox (83.92601pt too wide) in paragraph at lines 13079--13079 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 13105--13105 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 13116--13116 [][] [161] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13164--13164 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 13164--13164 [][] [162] [163] [164] [165] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13415--13415 []@texttt ncap2 -v -O -s 'rec_pck=pack(three_dmn_rec_var,-0.001,40.0);' in.nc foo.nc[] [166] [167] Overfull \hbox (60.93126pt too wide) in paragraph at lines 13555--13555 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n 3 type double[] [168] [169] Underfull \hbox (badness 10000) in paragraph at lines 13681--13690 []@textrm Consider ir-reg-u- Overfull \hbox (49.43388pt too wide) in paragraph at lines 13700--13700 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 13742--13742 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13742--13742 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 13742--13742 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13742--13742 [][] [170] [171] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13833--13833 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13858--13858 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [172] [173] [174] [175] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14060--14060 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14077--14077 [] @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re sizes)[] [176] [177] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14205--14205 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14205--14205 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14205--14205 [][] [178] Overfull \hbox (187.40239pt too wide) in paragraph at lines 14213--14213 [][] [179] Overfull \hbox (175.90501pt too wide) in paragraph at lines 14325--14325 [][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14325--14325 [][] [180] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14337--14337 [][] [181] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14456--14456 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 14473--14473 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);[] [182] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14506--14506 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [183] [184] [185] [186] Overfull \hbox (12.86244pt too wide) in paragraph at lines 14790--14791 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 14798--14799 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 14802--14803 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 14806--14807 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 14810--14811 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 14826--14827 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 14831--14832 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 14849--14849 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 14850--14850 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 14857--14857 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 14882--14883 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 14961--14962 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 14962--14963 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 14963--14964 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 14964--14964 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 14964--14965 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 14973--14974 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 14982--14983 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 14983--14983 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 14985--14986 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 14986--14986 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 15047--15047 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [187] [188] [189] [190] [191] [192] [193] Underfull \hbox (badness 10000) in paragraph at lines 15121--15123 []@texttt status=@textbf gsl[]fit[]linear [194] Underfull \hbox (badness 10000) in paragraph at lines 15134--15135 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ Underfull \hbox (badness 10000) in paragraph at lines 15152--15153 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ Overfull \hbox (14.94176pt too wide) in paragraph at lines 15178--15178 [][] [195] Overfull \hbox (158.65895pt too wide) in paragraph at lines 15206--15206 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 15206--15206 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 15206--15206 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 15223--15223 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 15224--15224 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 15225--15225 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] [196] Overfull \hbox (14.94176pt too wide) in paragraph at lines 15232--15232 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 15233--15233 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 15234--15234 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [197] [198] Overfull \hbox (175.90501pt too wide) in paragraph at lines 15340--15340 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15342--15342 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [199] [200] [201] [202] Underfull \hbox (badness 10000) in paragraph at lines 15865--15881 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 15925--15941 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: [203] Underfull \hbox (badness 10000) in paragraph at lines 16011--16021 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [204] [205] Overfull \hbox (26.43913pt too wide) in paragraph at lines 16220--16220 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16220--16220 [][] [206] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16298--16298 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16304--16304 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] Overfull \hbox (37.93651pt too wide) in paragraph at lines 17351--17351 []@texttt [-E @textttsl yr_prv@texttt ] [-e @textttsl yr_end@texttt ] [-f @tex tttsl fml_nm@texttt ] [--fl_fmt=@textttsl fl_fmt@texttt ] [-h @textttsl hst_nm@ texttt ] [-i @textttsl drc_in@texttt ][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 17383--17383 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [220] [221] [222] [223] [224] Overfull \hbox (38.26584pt too wide) in paragraph at lines 17938--17938 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 17939--17939 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [225] [226] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18094--18094 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18096--18096 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [227] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18162--18162 [][] [228] Overfull \hbox (37.93651pt too wide) in paragraph at lines 18207--18207 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [229] Underfull \hbox (badness 10000) in paragraph at lines 18381--18381 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm - [230] Underfull \hbox (badness 10000) in paragraph at lines 18382--18382 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm - Overfull \hbox (20.69044pt too wide) in paragraph at lines 18412--18412 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma p.nc \[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18418--18418 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg r_prv -r map.nc[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 18419--18419 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg r -r map.nc \[] [231] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18456--18456 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18456--18456 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18456--18456 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18456--18456 [][] [232] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18558--18558 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu -N ncclimo[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18565--18565 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc climo[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 18567--18567 []@texttt salloc -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na me=ncclimo[] [233] Overfull \hbox (55.18257pt too wide) in paragraph at lines 18635--18635 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18641--18641 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc limo \[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 18668--18668 [][] [234] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18668--18668 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 18668--18668 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18668--18668 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18668--18668 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 18668--18668 [][] [235] [236] Overfull \hbox (55.18257pt too wide) in paragraph at lines 18892--18892 [][] [237] [238] Overfull \hbox (32.18784pt too wide) in paragraph at lines 18937--18937 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--ga g] [--glb ...] [-h] [--hdf] [--hdr_pad @textttsl nbr@texttt ][] [239] [240] [241] Overfull \hbox (20.69044pt too wide) in paragraph at lines 19207--19207 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf x sfx][] Underfull \hbox (badness 10000) in paragraph at lines 19208--19208 []@texttt [-O] [-o @textttsl output- [242] [243] [244] Overfull \hbox (60.93127pt too wide) in paragraph at lines 19434--19434 []@texttt [-F] [--fix_rec_crd] [-G @textttsl gpe_dsc@texttt ] [-g @textttsl gr p@texttt [,[]]] [--glb ...] [-h] [--hdr_pad @textttsl nbr@texttt ][] [245] [246] Overfull \hbox (43.6852pt too wide) in paragraph at lines 19679--19679 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [247] [248] [249] Overfull \hbox (32.51715pt too wide) in paragraph at lines 19932--19932 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 19933--19933 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at lines 19936--19936 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n c[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 19937--19937 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only [] [250] [251] Overfull \hbox (147.4909pt too wide) in paragraph at lines 20125--20125 [][] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20146--20146 [][] [252] Overfull \hbox (55.5119pt too wide) in paragraph at lines 20159--20159 []@texttt /usr/hdf4/bin/ncgen -b -o ~/in.hdf ~/in.cdl # HDF ncgen (local build s)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20160--20160 []@texttt /usr/bin/hncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (RPM packages?)[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20161--20161 []@texttt /usr/bin/h4_ncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Ana conda)[] Overfull \hbox (124.49615pt too wide) in paragraph at lines 20162--20162 []@texttt /usr/bin/ncgen-hdf -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Deb ian packages?)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20163--20163 []@texttt hdp dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20164--20164 []@texttt h4_ncdump dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] [253] Overfull \hbox (61.26059pt too wide) in paragraph at lines 20241--20241 []@texttt % ncks --trd -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out .nc[] [254] Overfull \hbox (549.89905pt too wide) in paragraph at lines 20354--20354 [][] Overfull \hbox (463.66873pt too wide) in paragraph at lines 20354--20354 [][] [255] Overfull \hbox (71.44443pt too wide) in paragraph at lines 20384--20384 [][] Overfull \hbox (94.43918pt too wide) in paragraph at lines 20384--20384 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 20384--20384 [][] [256] Overfull \hbox (123.18262pt too wide) in paragraph at lines 20449--20449 [][] Overfull \hbox (71.44443pt too wide) in paragraph at lines 20449--20449 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 20449--20449 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 20449--20449 [][] Overfull \hbox (123.18262pt too wide) in paragraph at lines 20488--20488 [][] Overfull \hbox (111.68524pt too wide) in paragraph at lines 20488--20488 [][] Overfull \hbox (232.40768pt too wide) in paragraph at lines 20488--20488 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 20488--20488 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 20488--20488 [][] [257] [258] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20653--20653 [][] [259] Overfull \hbox (95.75272pt too wide) in paragraph at lines 20735--20735 []@texttt # 0.0,0.1,0.12,0.123,0.1234,0.12345,0.123456,0.1234567,0.12345678,0. 123456789[] Overfull \hbox (193.48041pt too wide) in paragraph at lines 20738--20738 []@texttt ppc_dbl = 0, 0.1, 0.12, 0.123, 0.1234, 0.12345, 0.123456, 0.1234567, 0.12345678, 0.123456789 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20743--20743 []@texttt ppc_dbl = 0., 0.1, 0.12, 0.123, 0.123, 0.123, 0.123, 0.123, 0.123, 0 .123 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20827--20827 [][] [260] Overfull \hbox (147.4909pt too wide) in paragraph at lines 20870--20870 [][] Overfull \hbox (285.45941pt too wide) in paragraph at lines 20870--20870 [][] Underfull \hbox (badness 10000) in paragraph at lines 20885--20900 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc edrm NcML[] @textrm out-put: Overfull \hbox (44.01453pt too wide) in paragraph at lines 20918--20918 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 20918--20918 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 20918--20918 [][] [261] Overfull \hbox (26.76846pt too wide) in paragraph at lines 20918--20918 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20988--20988 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/ /' | sort[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 21001--21001 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 21009--21009 [][] [262] Overfull \hbox (262.13533pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (244.88927pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (256.38664pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (158.65895pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (256.38664pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (371.3604pt too wide) in paragraph at lines 21107--21107 [][] [263] Overfull \hbox (164.40764pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (377.10909pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (135.6642pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (244.88927pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (124.16682pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (221.89452pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (124.16682pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 21107--21107 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 21107--21107 [][] [264] Overfull \hbox (26.43913pt too wide) in paragraph at lines 21187--21187 []@texttt # Change values to be sure original values are not copied in followi ng step[] [265] [266] [267] Overfull \hbox (32.18784pt too wide) in paragraph at lines 21406--21406 []@texttt [-R] [-r] [--ram_all] [-t @textttsl thr_nbr@texttt ] [-U] [--unn] [- v @textttsl var@texttt [,[]]] [-X ...] [-x][] [268] [269] [270] [271] [272] [273] [274] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21938--21938 []@texttt ncecat -O -u time in.nc out.nc # Create degenerate record dimension named "time"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21951--21951 []@texttt ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dim ension[] [275] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22000--22000 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 22004--22004 []@texttt [-O] [-o @textttsl output- Overfull \hbox (37.93651pt too wide) in paragraph at lines 22004--22004 @textttsl file@texttt ] [-p @textttsl path@texttt ] [--ppc ...] [-R] [-r] [--r am_all] [--rec_apn] [--rth_dbl|flt][] [276] [277] [278] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22249--22249 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 22253--22253 []@texttt [-O] [-o @textttsl output- [279] [280] Overfull \hbox (49.43388pt too wide) in paragraph at lines 22386--22386 []@texttt [--msk_dst=@textttsl 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Overfull \hbox (60.93126pt too wide) in paragraph at lines 26--26 [][][][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 27--27 [][][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 32--32 [][] ) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/crd.nco Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] ) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/pmt_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [342] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [343] [344] Overfull \hbox (60.93126pt too wide) in paragraph at lines 25894--25894 [][] Chapter 9 [345] [346] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26204--26204 [][] [347] [348] [349] [350] Overfull \hbox (37.93651pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 26204--26204 [][] [351] Overfull \hbox (693.28691pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26204--26204 [][] [352] Chapter 10 [353] [354] (General Index) [355] [356] (./nco.cps [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374]) [375] [376] ) (see the transcript file for additional information) Output written on nco.pdf (384 pages, 1613393 bytes). Transcript written on nco.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/nco-4.7.5/doc/./nco.texi (/builddir/build/BUILD/nco-4.7.5/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) 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ncks -v Time -d Time,0,10,2 http://eosdap.hdfgroup.uiuc.edu:8080/ope ndap/data/NASAFILES/hdf5/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5[] Overfull \hbox (658.79478pt too wide) in paragraph at lines 3808--3808 []@texttt ncks -O -D 1 -d time,1 -d lev,0 -d lat,0,100,10 -d lon,0,100,10 -v u _velocity http://nomads.ncep.noaa.gov:9090/dods/rtofs/rtofs_global20140303/rtof s_glo_2ds_forecast_daily_prog ~/foo.nc[] [41] Overfull \hbox (95.42339pt too wide) in paragraph at lines 3881--3881 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface \[] [42] [43] [44] [45] [46] Overfull \hbox (37.93651pt too wide) in paragraph at lines 4283--4283 []@texttt # Convert file with groups, multiple record dimensions + netCDF4 ato mic types[] [47] [48] [49] [50] [51] [52] [53] [54] [55] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5028--5028 []@texttt ncks -O -G : -g cesm -3 ~/nco/data/cmip5.nc ~/cesm.nc # Extract /ces m to /[] Overfull \hbox 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paragraph at lines 9692--9692 [][] [116] [117] [118] [119] [120] [121] [122] Overfull \hbox (20.69044pt too wide) in paragraph at lines 10356--10356 [] @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size- 1))' \[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10363--10363 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [123] [124] [125] [126] [127] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10742--10742 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10743--10743 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 10744--10744 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 10745--10745 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i n.nc ~/foo.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10753--10753 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [128] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10795--10795 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [129] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10870--10870 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc[] [130] [131] [132] Overfull \hbox (32.18782pt too wide) in paragraph at lines 11058--11058 []@texttt ncap2 -s 'tpt=tpt.convert(NC_SHORT);prs=prs.convert(NC_DOUBLE)' in.n c out.nc[] [133] [134] Overfull \hbox (112.66945pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11258--11258 [][] 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12267--12267 []@texttt defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime nsion)[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12270--12270 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed[] [149] [150] Overfull \hbox (89.6747pt too wide) in paragraph at lines 12428--12428 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12465--12465 []@texttt (A) var_out=array(val_srt, val_inc, $dmn_nm); // One-dimen sional output[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 12466--12466 []@texttt (B) var_out=array(val_srt, val_inc, var_tpl); // Multi-dim ensional output[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 12467--12467 []@texttt (C) var_out=array(val_srt, val_inc, /$dmn1,$dmn2...,$dmnN/); // Mult i-dimensional output[] [151] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12484--12484 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24 .5,26.5,28.5[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12513--12513 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [152] [153] [154] [155] Overfull \hbox (118.41814pt too wide) in paragraph at lines 12785--12785 [][] [156] [157] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12889--12889 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12908--12908 [][] [158] [159] [160] Overfull \hbox (83.92601pt too wide) in paragraph at lines 13079--13079 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 13105--13105 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 13116--13116 [][] [161] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13164--13164 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 13164--13164 [][] [162] [163] [164] [165] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13415--13415 []@texttt ncap2 -v -O -s 'rec_pck=pack(three_dmn_rec_var,-0.001,40.0);' in.nc foo.nc[] [166] [167] Overfull \hbox (60.93126pt too wide) in paragraph at lines 13555--13555 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n 3 type double[] [168] [169] Underfull \hbox (badness 10000) in paragraph at lines 13681--13690 []@textrm Consider ir-reg-u- Overfull \hbox (49.43388pt too wide) in paragraph at lines 13700--13700 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 13742--13742 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13742--13742 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 13742--13742 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13742--13742 [][] [170] [171] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13833--13833 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13858--13858 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [172] [173] [174] [175] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14060--14060 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14077--14077 [] @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re sizes)[] [176] [177] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14205--14205 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14205--14205 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14205--14205 [][] [178] Overfull \hbox (187.40239pt too wide) in paragraph at lines 14213--14213 [][] [179] Overfull \hbox (175.90501pt too wide) in paragraph at lines 14325--14325 [][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14325--14325 [][] [180] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14337--14337 [][] [181] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14456--14456 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 14473--14473 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);[] [182] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14506--14506 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [183] [184] [185] [186] Overfull \hbox (12.86244pt too wide) in paragraph at lines 14790--14791 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 14798--14799 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 14802--14803 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 14806--14807 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 14810--14811 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 14826--14827 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 14831--14832 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 14849--14849 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 14850--14850 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 14857--14857 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 14882--14883 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 14961--14962 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 14962--14963 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 14963--14964 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 14964--14964 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 14964--14965 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 14973--14974 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 14982--14983 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 14983--14983 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 14985--14986 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 14986--14986 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 15047--15047 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [187] [188] [189] [190] [191] [192] [193] Underfull \hbox (badness 10000) in paragraph at lines 15121--15123 []@texttt status=@textbf gsl[]fit[]linear [194] Underfull \hbox (badness 10000) in paragraph at lines 15134--15135 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ Underfull \hbox (badness 10000) in paragraph at lines 15152--15153 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ Overfull \hbox (14.94176pt too wide) in paragraph at lines 15178--15178 [][] [195] Overfull \hbox (158.65895pt too wide) in paragraph at lines 15206--15206 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 15206--15206 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 15206--15206 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 15223--15223 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 15224--15224 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 15225--15225 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] [196] Overfull \hbox (14.94176pt too wide) in paragraph at lines 15232--15232 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 15233--15233 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 15234--15234 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [197] [198] Overfull \hbox (175.90501pt too wide) in paragraph at lines 15340--15340 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15342--15342 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [199] [200] [201] [202] Underfull \hbox (badness 10000) in paragraph at lines 15865--15881 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 15925--15941 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: [203] Underfull \hbox (badness 10000) in paragraph at lines 16011--16021 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [204] [205] Overfull \hbox (26.43913pt too wide) in paragraph at lines 16220--16220 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16220--16220 [][] [206] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16298--16298 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16304--16304 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] Overfull \hbox (37.93651pt too wide) in paragraph at lines 17351--17351 []@texttt [-E @textttsl yr_prv@texttt ] [-e @textttsl yr_end@texttt ] [-f @tex tttsl fml_nm@texttt ] [--fl_fmt=@textttsl fl_fmt@texttt ] [-h @textttsl hst_nm@ texttt ] [-i @textttsl drc_in@texttt ][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 17383--17383 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [220] [221] [222] [223] [224] Overfull \hbox (38.26584pt too wide) in paragraph at lines 17938--17938 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 17939--17939 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [225] [226] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18094--18094 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18096--18096 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [227] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18162--18162 [][] [228] Overfull \hbox (37.93651pt too wide) in paragraph at lines 18207--18207 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [229] Underfull \hbox (badness 10000) in paragraph at lines 18381--18381 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm - [230] Underfull \hbox (badness 10000) in paragraph at lines 18382--18382 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm - Overfull \hbox (20.69044pt too wide) in paragraph at lines 18412--18412 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma p.nc \[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18418--18418 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg r_prv -r map.nc[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 18419--18419 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg r -r map.nc \[] [231] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18456--18456 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18456--18456 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18456--18456 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18456--18456 [][] [232] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18558--18558 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu -N ncclimo[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18565--18565 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc climo[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 18567--18567 []@texttt salloc -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na me=ncclimo[] [233] Overfull \hbox (55.18257pt too wide) in paragraph at lines 18635--18635 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18641--18641 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc limo \[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 18668--18668 [][] [234] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18668--18668 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 18668--18668 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18668--18668 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 18668--18668 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 18668--18668 [][] [235] [236] Overfull \hbox (55.18257pt too wide) in paragraph at lines 18892--18892 [][] [237] [238] Overfull \hbox (32.18784pt too wide) in paragraph at lines 18937--18937 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--ga g] [--glb ...] [-h] [--hdf] [--hdr_pad @textttsl nbr@texttt ][] [239] [240] [241] Overfull \hbox (20.69044pt too wide) in paragraph at lines 19207--19207 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf x sfx][] Underfull \hbox (badness 10000) in paragraph at lines 19208--19208 []@texttt [-O] [-o @textttsl output- [242] [243] [244] Overfull \hbox (60.93127pt too wide) in paragraph at lines 19434--19434 []@texttt [-F] [--fix_rec_crd] [-G @textttsl gpe_dsc@texttt ] [-g @textttsl gr p@texttt [,[]]] [--glb ...] [-h] [--hdr_pad @textttsl nbr@texttt ][] [245] [246] Overfull \hbox (43.6852pt too wide) in paragraph at lines 19679--19679 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [247] [248] [249] Overfull \hbox (32.51715pt too wide) in paragraph at lines 19932--19932 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 19933--19933 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at lines 19936--19936 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n c[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 19937--19937 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only [] [250] [251] Overfull \hbox (147.4909pt too wide) 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[][] [260] Overfull \hbox (147.4909pt too wide) in paragraph at lines 20870--20870 [][] Overfull \hbox (285.45941pt too wide) in paragraph at lines 20870--20870 [][] Underfull \hbox (badness 10000) in paragraph at lines 20885--20900 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc edrm NcML[] @textrm out-put: Overfull \hbox (44.01453pt too wide) in paragraph at lines 20918--20918 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 20918--20918 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 20918--20918 [][] [261] Overfull \hbox (26.76846pt too wide) in paragraph at lines 20918--20918 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20988--20988 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/ /' | sort[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 21001--21001 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort[] 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dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 22004--22004 []@texttt [-O] [-o @textttsl output- Overfull \hbox (37.93651pt too wide) in paragraph at lines 22004--22004 @textttsl file@texttt ] [-p @textttsl path@texttt ] [--ppc ...] [-R] [-r] [--r am_all] [--rec_apn] [--rth_dbl|flt][] [276] [277] [278] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22249--22249 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 22253--22253 []@texttt [-O] [-o @textttsl output- [279] [280] Overfull \hbox (49.43388pt too wide) in paragraph at lines 22386--22386 []@texttt [--msk_dst=@textttsl 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(106.92076pt too wide) in paragraph at lines 24501--24501 [][] [305] [306] Overfull \hbox (49.4339pt too wide) in paragraph at lines 24576--24576 []@texttt ncwa [-3] [-4] [-5] [-6] [-7] [-A] [-a @textttsl dim@texttt [,[]]] [ -B @textttsl mask_cond@texttt ] [-b] [-C] [-c][] Underfull \hbox (badness 10000) in paragraph at lines 24583--24583 []@texttt [-O] [-o @textttsl output- [307] [308] [309] [310] Chapter 5 [311] [312] [313] [314] [315] Chapter 6 [316] [317] Chapter 7 [318] (/builddir/build/BUILD/nco-4.7.5/doc/xmp/cmb_fl.sh Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] [319] Overfull \hbox (32.18782pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 46--46 [][] [320] Overfull \hbox (55.18257pt too wide) in paragraph at lines 56--56 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 70--70 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 74--74 [][] Overfull \hbox (37.93651pt too 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wide) in paragraph at lines 28--28 [][] [329] Overfull \hbox (43.6852pt too wide) in paragraph at lines 42--42 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 47--47 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 48--48 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 63--63 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 71--71 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 85--85 [][] [330] Overfull \hbox (43.6852pt too wide) in paragraph at lines 93--93 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 97--97 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 105--105 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 114--114 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 122--122 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 127--127 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 129--129 [][] [331] Overfull 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in paragraph at lines 51--51 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 52--52 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 61--61 [][][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 63--63 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 68--68 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 71--71 [][] [336] Overfull \hbox (43.6852pt too wide) in paragraph at lines 76--76 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 77--77 [][] ) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/mcc_grp.sh [337]) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/rgr.sh [338] Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 6--6 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10--10 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 27--27 [][][][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 28--28 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 33--33 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 37--37 [][] ) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/bi_interp.nco [339] Overfull \hbox (14.94176pt too wide) in paragraph at lines 34--34 [][][][] [340] Overfull \hbox (20.69044pt too wide) in paragraph at lines 61--61 [][][] ) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/add_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 5--5 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 6--6 [][][][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 8--8 [][][] [341] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 26--26 [][][][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 27--27 [][][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 32--32 [][] ) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/crd.nco Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] ) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/pmt_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [342] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [343] [344] Overfull \hbox (60.93126pt too wide) in paragraph at lines 25894--25894 [][] Chapter 9 [345] [346] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26204--26204 [][] [347] [348] [349] [350] Overfull \hbox (37.93651pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 26204--26204 [][] [351] Overfull \hbox (693.28691pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26204--26204 [][] [352] Chapter 10 [353] [354] (General Index) [355] [356] (./nco.cps [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374]) [375] [376] ) (see the transcript file for additional information) Output written on nco.pdf (384 pages, 1613229 bytes). Transcript written on nco.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013) restricted \write18 enabled. entering extended mode (/builddir/build/BUILD/nco-4.7.5/doc/./nco.texi (/builddir/build/BUILD/nco-4.7.5/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./nco.aux) (/builddir/build/BUILD/nco-4.7.5/doc/my-bib-macros.texi) [1{/usr/share/texlive/ texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./nco.toc [-1] [-2] [-3] [-4]) [-5] [-6] (./nco.toc) (./nco.toc) (Foreword) [1] (Summary) [2] [3] [4] Chapter 1 [5] [6] [7] [8] [9] [10] [11] [12] Overfull \hbox (32.18782pt too wide) in paragraph at lines 1381--1381 []@texttt ncks fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.4.0+, netCDF 4.3.1+)[] [13] [14] [15] Chapter 2 [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 3 [27] [28] [29] [30] [31] [32] Overfull \hbox (55.18257pt too wide) in paragraph at lines 3037--3037 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3065--3065 [][] [33] [34] [35] [36] [37] [38] [39] Overfull \hbox (95.42339pt too wide) in paragraph at lines 3759--3759 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface \[] [40] Overfull \hbox (382.85777pt too wide) in paragraph at lines 3806--3806 []@texttt ncks -v Time -d Time,0,10,2 http://eosdap.hdfgroup.uiuc.edu:8080/ope ndap/data/NASAFILES/hdf5/BUV-Nimbus04_L3zm_v01-00-2012m0203t144121.h5[] Overfull \hbox (658.79478pt too wide) in paragraph at lines 3808--3808 []@texttt ncks -O -D 1 -d time,1 -d lev,0 -d lat,0,100,10 -d lon,0,100,10 -v u _velocity http://nomads.ncep.noaa.gov:9090/dods/rtofs/rtofs_global20140303/rtof s_glo_2ds_forecast_daily_prog ~/foo.nc[] [41] Overfull \hbox (95.42339pt too wide) in paragraph at lines 3881--3881 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface \[] [42] [43] [44] [45] [46] Overfull \hbox (37.93651pt too wide) in paragraph at lines 4283--4283 []@texttt # Convert file with groups, multiple record dimensions + netCDF4 ato mic types[] [47] [48] [49] [50] [51] [52] [53] [54] [55] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5028--5028 []@texttt ncks -O -G : -g cesm -3 ~/nco/data/cmip5.nc ~/cesm.nc # Extract /ces m to /[] Overfull \hbox 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[][] Overfull \hbox (204.64845pt too wide) in paragraph at lines 6643--6643 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 6643--6643 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 6643--6643 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 6643--6643 [][] Overfull \hbox (221.89452pt too wide) in paragraph at lines 6643--6643 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 6643--6643 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 6643--6643 [][] Overfull \hbox (262.13533pt too wide) in paragraph at lines 6643--6643 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 6643--6643 [][] [78] Overfull \hbox (72.42863pt too wide) in paragraph at lines 6678--6678 [][] [79] Overfull \hbox (95.42339pt too wide) in paragraph at lines 6798--6798 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 6798--6798 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 6798--6798 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 6798--6798 [][] [80] Overfull \hbox (20.69044pt too wide) in paragraph at lines 6798--6798 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 6798--6798 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 6827--6827 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 6827--6827 [][] [81] [82] [83] [84] [85] [86] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7314--7314 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 7314--7314 [][] [87] [88] Overfull \hbox (32.18782pt too wide) in paragraph at lines 7454--7454 [][] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] Overfull \hbox (55.18257pt too wide) in paragraph at lines 9287--9287 []@texttt # b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h 0.0001-01.nc[] [111] [112] [113] [114] [115] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9692--9692 [][] [116] [117] [118] [119] [120] [121] [122] Overfull \hbox (20.69044pt too wide) in paragraph at lines 10356--10356 [] @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size- 1))' \[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10363--10363 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [123] [124] [125] [126] [127] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10742--10742 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10743--10743 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 10744--10744 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 10745--10745 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i n.nc ~/foo.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10753--10753 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [128] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10795--10795 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [129] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10870--10870 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc[] [130] [131] [132] Overfull \hbox (32.18782pt too wide) in paragraph at lines 11058--11058 []@texttt ncap2 -s 'tpt=tpt.convert(NC_SHORT);prs=prs.convert(NC_DOUBLE)' in.n c out.nc[] [133] [134] Overfull \hbox (112.66945pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (193.15108pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11258--11258 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 11258--11258 [][] [135] [136] [137] [138] [139] Chapter 4 Underfull \hbox (badness 10000) in paragraph at lines 11808--11829 @texttt "3.9.5" last modified 2008/05/11 built May 12 2008 on neige by [140] [141] [142] [143] Overfull \hbox (66.67995pt too wide) in paragraph at lines 11892--11892 []@texttt [-D @textttsl dbg@texttt ] [-F] [-f] [--glb ...] [-h] [--hdf] [--hdr _pad @textttsl nbr@texttt ] [-L @textttsl dfl_lvl@texttt ] [-l @textttsl path@t exttt ][] [144] [145] [146] [147] [148] Overfull \hbox (20.69044pt too wide) in paragraph at lines 12267--12267 []@texttt defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime nsion)[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12270--12270 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed[] [149] [150] Overfull \hbox (89.6747pt too wide) in paragraph at lines 12428--12428 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12465--12465 []@texttt (A) var_out=array(val_srt, val_inc, $dmn_nm); // One-dimen sional output[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 12466--12466 []@texttt (B) var_out=array(val_srt, val_inc, var_tpl); // Multi-dim ensional output[] Overfull \hbox (101.17207pt too wide) in paragraph at lines 12467--12467 []@texttt (C) var_out=array(val_srt, val_inc, /$dmn1,$dmn2...,$dmnN/); // Mult i-dimensional output[] [151] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12484--12484 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24 .5,26.5,28.5[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12513--12513 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [152] [153] [154] [155] Overfull \hbox (118.41814pt too wide) in paragraph at lines 12785--12785 [][] [156] [157] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12889--12889 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12908--12908 [][] [158] [159] [160] Overfull \hbox (83.92601pt too wide) in paragraph at lines 13079--13079 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 13105--13105 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 13116--13116 [][] [161] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13164--13164 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 13164--13164 [][] [162] [163] [164] [165] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13415--13415 []@texttt ncap2 -v -O -s 'rec_pck=pack(three_dmn_rec_var,-0.001,40.0);' in.nc foo.nc[] [166] [167] Overfull \hbox (60.93126pt too wide) in paragraph at lines 13555--13555 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n 3 type double[] [168] [169] Underfull \hbox (badness 10000) in paragraph at lines 13681--13690 []@textrm Consider ir-reg-u- Overfull \hbox (49.43388pt too wide) in paragraph at lines 13700--13700 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 13742--13742 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13742--13742 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 13742--13742 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 13742--13742 [][] [170] [171] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13833--13833 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13858--13858 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [172] [173] [174] [175] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14060--14060 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14077--14077 [] @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re sizes)[] [176] [177] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14205--14205 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14205--14205 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14205--14205 [][] [178] Overfull \hbox (187.40239pt too wide) in paragraph at lines 14213--14213 [][] [179] Overfull \hbox (175.90501pt too wide) in paragraph at lines 14325--14325 [][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 14325--14325 [][] [180] Overfull \hbox (49.43388pt too wide) in paragraph at lines 14337--14337 [][] [181] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14456--14456 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 14473--14473 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);[] [182] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14506--14506 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [183] [184] [185] [186] Overfull \hbox (12.86244pt too wide) in paragraph at lines 14790--14791 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 14798--14799 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 14802--14803 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 14806--14807 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 14810--14811 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 14826--14827 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 14831--14832 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 14849--14849 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 14850--14850 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 14857--14857 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 14882--14883 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 14961--14962 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 14962--14963 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 14963--14964 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 14964--14964 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 14964--14965 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 14973--14974 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 14982--14983 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 14983--14983 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 14985--14986 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 14986--14986 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 15047--15047 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [187] [188] [189] [190] [191] [192] [193] Underfull \hbox (badness 10000) in paragraph at lines 15121--15123 []@texttt status=@textbf gsl[]fit[]linear [194] Underfull \hbox (badness 10000) in paragraph at lines 15134--15135 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ Underfull \hbox (badness 10000) in paragraph at lines 15152--15153 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ Overfull \hbox (14.94176pt too wide) in paragraph at lines 15178--15178 [][] [195] Overfull \hbox (158.65895pt too wide) in paragraph at lines 15206--15206 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 15206--15206 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 15206--15206 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 15223--15223 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 15224--15224 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 15225--15225 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] [196] Overfull \hbox (14.94176pt too wide) in paragraph at lines 15232--15232 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 15233--15233 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 15234--15234 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [197] [198] Overfull \hbox (175.90501pt too wide) in paragraph at lines 15340--15340 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15342--15342 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [199] [200] [201] [202] Underfull \hbox (badness 10000) in paragraph at lines 15865--15881 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 15925--15941 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: [203] Underfull \hbox (badness 10000) in paragraph at lines 16011--16021 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [204] [205] Overfull \hbox (26.43913pt too wide) in paragraph at lines 16220--16220 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16220--16220 [][] [206] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16298--16298 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16304--16304 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] Overfull \hbox (37.93651pt too wide) in paragraph at lines 17351--17351 []@texttt [-E @textttsl yr_prv@texttt ] [-e @textttsl yr_end@texttt ] [-f @tex tttsl fml_nm@texttt ] [--fl_fmt=@textttsl fl_fmt@texttt ] [-h @textttsl hst_nm@ texttt ] [-i @textttsl drc_in@texttt ][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 17383--17383 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [220] [221] [222] [223] [224] Overfull \hbox (38.26584pt too wide) in paragraph at lines 17938--17938 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 17939--17939 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [225] [226] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18094--18094 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 18096--18096 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [227] Overfull \hbox (20.69044pt too wide) in paragraph at lines 18162--18162 [][] [228] Overfull \hbox (37.93651pt too wide) in paragraph at lines 18207--18207 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [229] Underfull 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[-F] [--fix_rec_crd] [-G @textttsl gpe_dsc@texttt ] [-g @textttsl gr p@texttt [,[]]] [--glb ...] [-h] [--hdr_pad @textttsl nbr@texttt ][] [245] [246] Overfull \hbox (43.6852pt too wide) in paragraph at lines 19679--19679 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [247] [248] [249] Overfull \hbox (32.51715pt too wide) in paragraph at lines 19932--19932 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 19933--19933 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at lines 19936--19936 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n c[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 19937--19937 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only [] [250] [251] Overfull \hbox (147.4909pt too wide) in paragraph at lines 20125--20125 [][] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20146--20146 [][] [252] Overfull \hbox (55.5119pt too wide) in paragraph at lines 20159--20159 []@texttt /usr/hdf4/bin/ncgen -b -o ~/in.hdf ~/in.cdl # HDF ncgen (local build s)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20160--20160 []@texttt /usr/bin/hncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (RPM packages?)[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 20161--20161 []@texttt /usr/bin/h4_ncgen -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Ana conda)[] Overfull \hbox (124.49615pt too wide) in paragraph at lines 20162--20162 []@texttt /usr/bin/ncgen-hdf -b -o ~/in.hdf ~/in.cdl # Same as HDF ncgen (Deb ian packages?)[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20163--20163 []@texttt hdp dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] Overfull \hbox (107.25009pt too wide) in paragraph at lines 20164--20164 []@texttt h4_ncdump dumpsds ~/in.hdf # ncdump/h5dump-equivale nt for HDF4[] [253] Overfull \hbox (61.26059pt too wide) in paragraph at lines 20241--20241 []@texttt % ncks --trd -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out .nc[] [254] Overfull \hbox (549.89905pt too wide) in paragraph at lines 20354--20354 [][] Overfull \hbox (463.66873pt too wide) in paragraph at lines 20354--20354 [][] [255] Overfull \hbox (71.44443pt too wide) in paragraph at lines 20384--20384 [][] Overfull \hbox (94.43918pt too wide) in paragraph at lines 20384--20384 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 20384--20384 [][] [256] Overfull \hbox (123.18262pt too wide) in paragraph at lines 20449--20449 [][] Overfull \hbox (71.44443pt too wide) in paragraph at lines 20449--20449 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 20449--20449 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 20449--20449 [][] Overfull \hbox (123.18262pt too wide) in paragraph at lines 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[][] [260] Overfull \hbox (147.4909pt too wide) in paragraph at lines 20870--20870 [][] Overfull \hbox (285.45941pt too wide) in paragraph at lines 20870--20870 [][] Underfull \hbox (badness 10000) in paragraph at lines 20885--20900 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc edrm NcML[] @textrm out-put: Overfull \hbox (44.01453pt too wide) in paragraph at lines 20918--20918 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 20918--20918 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 20918--20918 [][] [261] Overfull \hbox (26.76846pt too wide) in paragraph at lines 20918--20918 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20988--20988 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/ /' | sort[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 21001--21001 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort[] 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paragraph at lines 21107--21107 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 21107--21107 [][] [264] Overfull \hbox (26.43913pt too wide) in paragraph at lines 21187--21187 []@texttt # Change values to be sure original values are not copied in followi ng step[] [265] [266] [267] Overfull \hbox (32.18784pt too wide) in paragraph at lines 21406--21406 []@texttt [-R] [-r] [--ram_all] [-t @textttsl thr_nbr@texttt ] [-U] [--unn] [- v @textttsl var@texttt [,[]]] [-X ...] [-x][] [268] [269] [270] [271] [272] [273] [274] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21938--21938 []@texttt ncecat -O -u time in.nc out.nc # Create degenerate record dimension named "time"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21951--21951 []@texttt ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dim ension[] [275] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22000--22000 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 22004--22004 []@texttt [-O] [-o @textttsl output- Overfull \hbox (37.93651pt too wide) in paragraph at lines 22004--22004 @textttsl file@texttt ] [-p @textttsl path@texttt ] [--ppc ...] [-R] [-r] [--r am_all] [--rec_apn] [--rth_dbl|flt][] [276] [277] [278] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22249--22249 []@texttt [-D @textttsl dbg@texttt ] [-d @textttsl dim@texttt ,[@textttsl min@ texttt ][,[@textttsl max@texttt ][,[@textttsl stride@texttt ][,[@textttsl subcy cle@texttt ]]]] [-F] [--fl_fmt @textttsl fl_fmt@texttt ][] Underfull \hbox (badness 10000) in paragraph at lines 22253--22253 []@texttt [-O] [-o @textttsl output- [279] [280] Overfull \hbox (49.43388pt too wide) in paragraph at lines 22386--22386 []@texttt [--msk_dst=@textttsl msk_dst@texttt ] [--msk_out=@textttsl msk_out@t exttt ] [--msk_src=@textttsl msk_src@texttt ] [--mss_val=@textttsl mss_val@text tt ][] [281] [282] Overfull \hbox (61.26059pt too wide) in paragraph at lines 22592--22592 [][] Underfull \hbox (badness 10000) in paragraph at lines 22599--22600 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 22601--22605 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 22606--22607 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv Underfull \hbox (badness 10000) in paragraph at lines 22610--22611 []@textrm Options: `@texttt --in_type cgll --in_np 4 --out_type fv [283] Overfull \hbox (55.5119pt too wide) in paragraph at lines 22658--22658 []@texttt ncremap --a2o -a se2fv_flx --src_grd=atm.nc --dst_grd=ocn.nc -m map. nc[] Overfull \hbox (55.5119pt too wide) in paragraph at lines 22660--22660 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(106.92076pt too wide) in paragraph at lines 24501--24501 [][] [305] [306] Overfull \hbox (49.4339pt too wide) in paragraph at lines 24576--24576 []@texttt ncwa [-3] [-4] [-5] [-6] [-7] [-A] [-a @textttsl dim@texttt [,[]]] [ -B @textttsl mask_cond@texttt ] [-b] [-C] [-c][] Underfull \hbox (badness 10000) in paragraph at lines 24583--24583 []@texttt [-O] [-o @textttsl output- [307] [308] [309] [310] Chapter 5 [311] [312] [313] [314] [315] Chapter 6 [316] [317] Chapter 7 [318] (/builddir/build/BUILD/nco-4.7.5/doc/xmp/cmb_fl.sh Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] [319] Overfull \hbox (32.18782pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 46--46 [][] [320] Overfull \hbox (55.18257pt too wide) in paragraph at lines 56--56 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 70--70 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 74--74 [][] Overfull \hbox (37.93651pt too 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in paragraph at lines 51--51 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 52--52 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 61--61 [][][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 63--63 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 68--68 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 71--71 [][] [336] Overfull \hbox (43.6852pt too wide) in paragraph at lines 76--76 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 77--77 [][] ) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/mcc_grp.sh [337]) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/rgr.sh [338] Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 6--6 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10--10 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 27--27 [][][][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 28--28 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 33--33 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 37--37 [][] ) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/bi_interp.nco [339] Overfull \hbox (14.94176pt too wide) in paragraph at lines 34--34 [][][][] [340] Overfull \hbox (20.69044pt too wide) in paragraph at lines 61--61 [][][] ) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/add_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 5--5 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 6--6 [][][][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 8--8 [][][] [341] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 26--26 [][][][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 27--27 [][][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 32--32 [][] ) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/crd.nco Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] ) (/builddir/build/BUILD/nco-4.7.5/doc/xmp/pmt_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [342] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [343] [344] Overfull \hbox (60.93126pt too wide) in paragraph at lines 25894--25894 [][] Chapter 9 [345] [346] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26204--26204 [][] [347] [348] [349] [350] Overfull \hbox (37.93651pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 26204--26204 [][] [351] Overfull \hbox (693.28691pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26204--26204 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 26204--26204 [][] [352] Chapter 10 [353] [354] (General Index) [355] [356] (./nco.cps [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374]) [375] [376] ) (see the transcript file for additional information) Output written on nco.pdf (384 pages, 1613229 bytes). Transcript written on nco.log. make: Leaving directory `/builddir/build/BUILD/nco-4.7.5/doc' + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.X4iRV2 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm '!=' / ']' + rm -rf /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm ++ dirname /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm + cd nco-4.7.5 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm Making install in data make[1]: Entering directory `/builddir/build/BUILD/nco-4.7.5/data' make[2]: Entering directory `/builddir/build/BUILD/nco-4.7.5/data' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin' /usr/bin/install -c ncclimo ncremap '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin' make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/data' make[1]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/data' Making install in src make[1]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src' Making install in nco make[2]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src/nco' make[3]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src/nco' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco.la '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib' libtool: install: /usr/bin/install -c .libs/libnco-4.7.5.so /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib/libnco-4.7.5.so libtool: install: (cd /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib && { ln -s -f libnco-4.7.5.so libnco.so || { rm -f libnco.so && ln -s libnco-4.7.5.so libnco.so; }; }) libtool: install: /usr/bin/install -c .libs/libnco.lai /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib/libnco.la libtool: install: /usr/bin/install -c .libs/libnco.a /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib/libnco.a libtool: install: chmod 644 /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib/libnco.a libtool: install: ranlib /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib/libnco.a libtool: install: warning: remember to run `libtool --finish /usr/lib' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename ncwa '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin' libtool: install: warning: `libnco.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/ncatted /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncatted libtool: install: warning: `libnco.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/ncbo /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncbo libtool: install: warning: `libnco.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/ncecat /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncecat libtool: install: warning: `libnco.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/ncflint /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncflint libtool: install: warning: `libnco.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/ncks /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncks libtool: install: warning: `libnco.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/ncpdq /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncpdq libtool: install: warning: `libnco.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/ncra /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncra libtool: install: warning: `libnco.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/ncrename /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncrename libtool: install: warning: `libnco.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/ncwa /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncwa /usr/bin/make install-exec-hook make[4]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src/nco' cd /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin && ln -s -f ncbo ncdiff || (rm -f ncdiff && ln -s -f ncbo ncdiff) cd /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin && ln -s -f ncra ncea || (rm -f ncea && ln -s -f ncra ncea) cd /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin && ln -s -f ncra nces || (rm -f nces && ln -s -f ncra nces) cd /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin && ln -s -f ncra ncrcat || (rm -f ncrcat && ln -s -f ncra ncrcat) make[4]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src/nco' make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src/nco' make[2]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src/nco' Making install in nco_c++ make[2]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src/nco_c++' make[3]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src/nco_c++' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco_c++.la '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib' libtool: install: /usr/bin/install -c .libs/libnco_c++-4.7.5.so /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib/libnco_c++-4.7.5.so libtool: install: (cd /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib && { ln -s -f libnco_c++-4.7.5.so libnco_c++.so || { rm -f libnco_c++.so && ln -s libnco_c++-4.7.5.so libnco_c++.so; }; }) libtool: install: /usr/bin/install -c .libs/libnco_c++.lai /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib/libnco_c++.la libtool: install: /usr/bin/install -c .libs/libnco_c++.a /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib/libnco_c++.a libtool: install: chmod 644 /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib/libnco_c++.a libtool: install: ranlib /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib/libnco_c++.a libtool: install: warning: remember to run `libtool --finish /usr/lib' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/include/nco' /usr/bin/install -c -m 644 libnco_c++.hh nco_dmn.hh nco_hgh.hh nco_var.hh nco_att.hh nco_fl.hh nco_utl.hh '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/include/nco' make[3]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src/nco_c++' make[2]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src/nco_c++' Making install in nco++ make[2]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src/nco++' make[3]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src/nco++' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncap2 '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin' libtool: install: warning: `/builddir/build/BUILD/nco-4.7.5/src/nco/libnco.la' has not been installed in `/usr/lib' libtool: install: /usr/bin/install -c .libs/ncap2 /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncap2 make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src/nco++' make[2]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src/nco++' make[2]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src' make[3]: Entering directory `/builddir/build/BUILD/nco-4.7.5/src' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src' make[2]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src' make[1]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/src' Making install in man make[1]: Entering directory `/builddir/build/BUILD/nco-4.7.5/man' make[2]: Entering directory `/builddir/build/BUILD/nco-4.7.5/man' make[2]: Nothing to be done for `install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/man/man1' /usr/bin/install -c -m 644 ncap2.1 ncatted.1 ncbo.1 ncclimo.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncra.1 ncremap.1 ncrename.1 ncpdq.1 ncrcat.1 ncwa.1 '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/man/man1' make[2]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/man' make[1]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/man' Making install in doc make[1]: Entering directory `/builddir/build/BUILD/nco-4.7.5/doc' make[2]: Entering directory `/builddir/build/BUILD/nco-4.7.5/doc' make[2]: Nothing to be done for `install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/info' /usr/bin/install -c -m 644 ./nco.info ./nco.info-1 ./nco.info-2 ./nco.info-3 ./nco.info-4 '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/info' install-info --info-dir='/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/info' '/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/info/nco.info' make[2]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/doc' make[1]: Leaving directory `/builddir/build/BUILD/nco-4.7.5/doc' make[1]: Entering directory `/builddir/build/BUILD/nco-4.7.5' make[2]: Entering directory `/builddir/build/BUILD/nco-4.7.5' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/builddir/build/BUILD/nco-4.7.5' make[1]: Leaving directory `/builddir/build/BUILD/nco-4.7.5' + rm /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib/libnco.la /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib/libnco_c++.la + rm -f /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/info/dir + chrpath -d -k /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncap2 /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncatted /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncbo /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncclimo /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncdiff /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncea /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncecat /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/nces /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncflint /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncks /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncpdq /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncra /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncrcat /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncremap /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncrename /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncwa `/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncclimo' probably isn't an ELF file. elf_open: Exec format error `/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncremap' probably isn't an ELF file. elf_open: Exec format error + : + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/nco-4.7.5 extracting debug info from /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncks extracting debug info from /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncra extracting debug info from /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncrename extracting debug info from /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncap2 extracting debug info from /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncatted extracting debug info from /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncecat extracting debug info from /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncbo extracting debug info from /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncpdq extracting debug info from /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncflint extracting debug info from /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/bin/ncwa extracting debug info from /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib/libnco_c++-4.7.5.so extracting debug info from /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/lib/libnco-4.7.5.so /usr/lib/rpm/sepdebugcrcfix: Updated 12 CRC32s, 0 CRC32s did match. symlinked /usr/lib/debug/usr/bin/ncra.debug to /usr/lib/debug/usr/bin/nces.debug symlinked /usr/lib/debug/usr/bin/ncra.debug to /usr/lib/debug/usr/bin/ncrcat.debug symlinked /usr/lib/debug/usr/bin/ncbo.debug to /usr/lib/debug/usr/bin/ncdiff.debug symlinked /usr/lib/debug/usr/bin/ncra.debug to /usr/lib/debug/usr/bin/ncea.debug symlinked /usr/lib/debug/usr/lib/libnco-4.7.5.so.debug to /usr/lib/debug/usr/lib/libnco.so.debug symlinked /usr/lib/debug/usr/lib/libnco_c++-4.7.5.so.debug to /usr/lib/debug/usr/lib/libnco_c++.so.debug cpio: nco-4.7.5/src/nco/ncap_yacc.h: Cannot stat: No such file or directory cpio: nco-4.7.5/src/nco/ncap_yacc.y: Cannot stat: No such file or directory 10579 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Processing files: nco-4.7.5-2.el7.armv7hl Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.1b4FQH + umask 022 + cd /builddir/build/BUILD + cd nco-4.7.5 + DOCDIR=/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/doc/nco-4.7.5 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/doc/nco-4.7.5 + cp -pr doc/README /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/doc/nco-4.7.5 + cp -pr doc/rtfm.txt /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/doc/nco-4.7.5 + cp -pr doc/nco.html /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/doc/nco-4.7.5 + cp -pr doc/nco.pdf /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/doc/nco-4.7.5 + cp -pr doc/nco.css /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/doc/nco-4.7.5 + cp -pr doc/index.shtml /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/doc/nco-4.7.5 + cp -pr doc/TODO /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/doc/nco-4.7.5 + cp -pr doc/ChangeLog /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/doc/nco-4.7.5 + cp -pr doc/nco.png /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/doc/nco-4.7.5 + cp -pr doc/nco_news.shtml /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/doc/nco-4.7.5 + cp -pr doc/nsf.png /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/doc/nco-4.7.5 + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ZX5bPC + umask 022 + cd /builddir/build/BUILD + cd nco-4.7.5 + LICENSEDIR=/builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/licenses/nco-4.7.5 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/licenses/nco-4.7.5 + cp -pr doc/LICENSE /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm/usr/share/licenses/nco-4.7.5 + exit 0 Provides: libnco-4.7.5.so libnco_c++-4.7.5.so nco = 4.7.5-2.el7 nco(armv7hl-32) = 4.7.5-2.el7 Requires(interp): /bin/sh /bin/sh Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /bin/sh Requires(postun): /bin/sh Requires: /bin/bash ld-linux-armhf.so.3 ld-linux-armhf.so.3(GLIBC_2.4) libc.so.6 libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libcurl.so.4 libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libgcc_s.so.1(GCC_3.5) libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(OMP_1.0) libgsl.so.0 libgslcblas.so.0 libm.so.6 libm.so.6(GLIBC_2.4) libnco-4.7.5.so libnetcdf.so.7 libpthread.so.0 libpthread.so.0(GLIBC_2.4) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_ARM_1.3.3) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.9) libudunits2.so.0 rtld(GNU_HASH) Processing files: nco-devel-4.7.5-2.el7.armv7hl Provides: nco-devel = 4.7.5-2.el7 nco-devel(armv7hl-32) = 4.7.5-2.el7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: nco-static-4.7.5-2.el7.armv7hl Provides: nco-static = 4.7.5-2.el7 nco-static(armv7hl-32) = 4.7.5-2.el7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: nco-debuginfo-4.7.5-2.el7.armv7hl Provides: nco-debuginfo = 4.7.5-2.el7 nco-debuginfo(armv7hl-32) = 4.7.5-2.el7 Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm Wrote: /builddir/build/RPMS/nco-4.7.5-2.el7.armv7hl.rpm Wrote: /builddir/build/RPMS/nco-devel-4.7.5-2.el7.armv7hl.rpm Wrote: /builddir/build/RPMS/nco-static-4.7.5-2.el7.armv7hl.rpm Wrote: /builddir/build/RPMS/nco-debuginfo-4.7.5-2.el7.armv7hl.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.KPF3hV + umask 022 + cd /builddir/build/BUILD + cd nco-4.7.5 + /usr/bin/rm -rf /builddir/build/BUILDROOT/nco-4.7.5-2.el7.arm + exit 0 Child return code was: 0